Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0107 ATGTCCTGTTCTCCCCCTTCATTCATATTCCCATTTCTCTTCCTATCCTTCATTTTACTCTCTTCTTTCACTGCTCATGCTTCTGTTCCCATCAAAAACACTTTCAAGTATGTCAACGAAGGCGAATTCGGGCCTTATATCGTTGAGTATGGTGGAGACTACCGCACCCTTCCGATCTTTGCTTCACCCTTCCAATTTTGTTTCTATAACACCACCCCTAATGCCTACACCCTTGCTTTAAGAATGGCTATTCAGCGGACTGAGCCAATCTATCGTTGGGTGTGGGAAGCCAACCGAGGGAAACCAGTTGGAGAGAATGCAACACTAACCTTCGGCACAGATGGAAATCTTGTCTTGGCCAATGCTGATGGCAGAGTTGCTTGGCAGACCGGCACAGCCAACAAGGGCGTGGTGGGGCTCAAATTGCTTTCAAATGGGAACTTGGTGCTCCATGACTCAAAAGGTAAATTCATTTGGCAGAGTTTCGATTATCCCACTGATGTCTTGCTGGTGGATCAGTCCCTTCGAGTAGGGGGCGTAACCAAGCTTGTTAGCCGGGCATCTGCGGCAGACAACTCAGATGGGAAATATAGCTTGGTTATGGAACCCAAAAGATTGGCTATGTACTATAGGGGTACCAACTCCCCAAAGCCAATTCTCTATGCTACATCTTCAGTATGGTTTACTATTGATAAGGGTTCTCTGCAGAATGTAACTCTGACTGGTTCTCCAGATGGTCTTGGTTATGCTTATTATCTAAACTTGAACTACCATCTCTCCAACTCACCATATCCGACTGGAGGCCGTATTTTGGTTAGACCCAAGTACAATAGTACATCAACATTTCTTCGTCTTGATATGGATGGGAACATCAGATTGTATACGTATTTTGACAAGGTGGATTATCAGGGTTGGCAAGTGACCTACACTCTTTTTGATAGAGATTCAGGTGATGAGACTGAGTGCCAATTGCCAGAGCGATGTGGGAAGTTTGGCCTCTGTGAGGACAGCCAGTGTGTTGCTTGCCCATCACCAAAGGGCCTGATGGGGTGGAGCAAGGACTGTGCGCCATTGAAGCTATCTGGTTGTGGGGTAAAAGATTTTCACTACTACAAACTTGAAGGGGTTGATCAATTCACGAGCAAGTACAGTAAGGGAGATGGACCCATGAAGGAGAAGCAATGTTCGGATAAATGTACCAGGGACTGTAAGTGTCTGGGCTATTTCTACCACACACTCACATCAAGGTGTTGGATCGCATATGACCTTAACACCTTAACCAAAGTCCAGAATTCAACACATTTGGCTTACATAAAGGCACCTAATAAGTTCTGA 1335 0.4547 MSCSPPSFIFPFLFLSFILLSSFTAHASVPIKNTFKYVNEGEFGPYIVEYGGDYRTLPIFASPFQFCFYNTTPNAYTLALRMAIQRTEPIYRWVWEANRGKPVGENATLTFGTDGNLVLANADGRVAWQTGTANKGVVGLKLLSNGNLVLHDSKGKFIWQSFDYPTDVLLVDQSLRVGGVTKLVSRASAADNSDGKYSLVMEPKRLAMYYRGTNSPKPILYATSSVWFTIDKGSLQNVTLTGSPDGLGYAYYLNLNYHLSNSPYPTGGRILVRPKYNSTSTFLRLDMDGNIRLYTYFDKVDYQGWQVTYTLFDRDSGDETECQLPERCGKFGLCEDSQCVACPSPKGLMGWSKDCAPLKLSGCGVKDFHYYKLEGVDQFTSKYSKGDGPMKEKQCSDKCTRDCKCLGYFYHTLTSRCWIAYDLNTLTKVQNSTHLAYIKAPNKF* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0107 444 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 421 - -
Vvi19g0107 444 Gene3D - 58 162 IPR036426 -
Vvi19g0107 444 FunFam Os04g0303100 protein 83 218 - -
Vvi19g0107 444 SMART blect_4 48 165 IPR001480 -
Vvi19g0107 444 CDD B_lectin 48 165 IPR001480 -
Vvi19g0107 444 CDD PAN_AP_plant 364 439 - -
Vvi19g0107 444 PIRSF SLG 1 443 IPR035446 -
Vvi19g0107 444 Pfam D-mannose binding lectin 94 184 IPR001480 -
Vvi19g0107 444 ProSiteProfiles Bulb-type lectin domain profile. 45 163 IPR001480 -
Vvi19g0107 444 SUPERFAMILY alpha-D-mannose-specific plant lectins 90 219 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0107 Vvi-Chr19 1285498 1286832 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0107 - - vvi:100262261 884.789