Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0096 ATGTCTGTCTCACTTCCCGTCACTCCTATTCCAACCACGCCAGGGGTAGATCATCAGGGGGTGGCTCGCTCCACAGCGAATTTTCCTCCTAACATTTGGGGTGATCGTTTCCTCATCTACACTCCTGATGATGCTATAACCCATGAATGTAAAGAACAGCAAATTGAAGAACTGAAAGAAGAAGTGAGAAAGGAGCTAAAAGCCAGTGCCAGTAAATCTCCGGAACTGCTGAAGTTGATAGATTCCATCCAACTCTTGGGATTGGCACACCACTTTGAAAGGGAGATCGAAGAAGCATTAAAAGACATGTATGGAACATATAGTCTGGTTGATGATAACGACGACTTCACAAATGCTTCGCTTCGGTTCCGACTACTAAGACAAGAAGGTTACCCCATTCCATCTGGTAAAAGCCCCTTTCCTATAGTTGCCAAAACATTTGTCATCTTGAATTACTTACCATTCATTGATTTAATGAACTTTACTGATGAAATAGATGTATTTAATAAGTTCAAAGACAAGGAAGGCAACTTCAAGGAATATTTGATTGGTGACTCACTTGGCATGCTAGCTTTATATGAAGCTACACATTTGATGGTGCATGGAGAAGACATACTAGAGGAAGCCCTGGCTTTCACCACTACTCATCTTCAGTCCATGGCAACTGATCCAAATAATCCTCTTGCAAAACAAGTGATTCGTGCACTAAAGCGGCCCATTCGCAAGGGCTTGACAAGGGTGGAGGCAACGCATTACATTTCCATCTACCAACAAGATGGTTCACATAATAAATCTTTACTCAAGCTTGCAAAGTTGGACTTCAACCTGTTGCAGTCACTCCATAGGAAAGAGCTAAGTGAGATCAGTAGGTGGTGGAAAGGTTTAGACGTTGCGACAAAGCTACCTTTTGCACGGGATAGACTAGTGGAGAGCTACTTTTGGACATTGGGAGTGTACTTTGAGCCCCAGTACTTCCCTGCTCGAAGGTTCTTAACGAAAATGACCGCTATGTTAACCATTATGGATGATATATATGATGCATATGGTACAATCGAAGAACTTGAACTCCTTACAGAAGCAGTCGAAAGATGGGATGCCAGCTGCATAGATCAACTGCCTGCAGATTATATGAAGTGGTTTTATCGGGCACTCTTGGATGTTTATGAAGAAATGGAAGAAGAGATGGCCAAGGAAGGGAAATTGTACCGTGTCCACTATGCAAAAGAAGCGATGAAAAGGCAAATCCAAGCCTACTTTATTGAAGCCAAATGGTTGAACCAACGATATGTACCAACATTCGATGAGTACATAAGTAATACACTAGTAAGTTGTGGTTACACTTTGCTCATTGCCACATCTTTCGTTGGCATGGGAGATGTAGTGACAGAGGAGGCCTTCCAATGGGTGCTCAGCCACGCCAAGATGATTAGAGCTTCAGAAACCATCAGCAGGCTCATGGATGACTTAGTTTCCCACGAGTTCGAACAAACAAGAATGCATGCCCCCTCAAGCATTGAGTGTTACATGAAGCAATATGAGGTTACAAAGCAGGAGGCTTGTGATGAGTTGAATAAGCAAATAGTCAGGGCATGGAAGGATATCAACCAGGAGTGCCTCAGACCTACACAAGTGCCAATGCCACTCGTCACACGTGTTCTAAATTTTAGCCGTGTGATAGATATCTTGTACAAGGATGAAGATGAGTACACCCACAATGGAAAATTGATAAAAGATCTCATTACATGGATGCTCATAGACCCTGTGCCAATGTAA 1773 0.4287 MSVSLPVTPIPTTPGVDHQGVARSTANFPPNIWGDRFLIYTPDDAITHECKEQQIEELKEEVRKELKASASKSPELLKLIDSIQLLGLAHHFEREIEEALKDMYGTYSLVDDNDDFTNASLRFRLLRQEGYPIPSGKSPFPIVAKTFVILNYLPFIDLMNFTDEIDVFNKFKDKEGNFKEYLIGDSLGMLALYEATHLMVHGEDILEEALAFTTTHLQSMATDPNNPLAKQVIRALKRPIRKGLTRVEATHYISIYQQDGSHNKSLLKLAKLDFNLLQSLHRKELSEISRWWKGLDVATKLPFARDRLVESYFWTLGVYFEPQYFPARRFLTKMTAMLTIMDDIYDAYGTIEELELLTEAVERWDASCIDQLPADYMKWFYRALLDVYEEMEEEMAKEGKLYRVHYAKEAMKRQIQAYFIEAKWLNQRYVPTFDEYISNTLVSCGYTLLIATSFVGMGDVVTEEAFQWVLSHAKMIRASETISRLMDDLVSHEFEQTRMHAPSSIECYMKQYEVTKQEACDELNKQIVRAWKDINQECLRPTQVPMPLVTRVLNFSRVIDILYKDEDEYTHNGKLIKDLITWMLIDPVPM* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0096 590 FunFam Isoprene synthase, chloroplastic 225 578 - -
Vvi19g0096 590 Gene3D - 52 276 IPR036965 GO:0010333|GO:0016829
Vvi19g0096 590 SUPERFAMILY Terpenoid synthases 262 590 IPR008949 -
Vvi19g0096 590 Pfam Terpene synthase, N-terminal domain 166 236 IPR001906 GO:0010333|GO:0016829
Vvi19g0096 590 Pfam Terpene synthase, N-terminal domain 32 135 IPR001906 GO:0010333|GO:0016829
Vvi19g0096 590 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 165 262 IPR008930 -
Vvi19g0096 590 Gene3D Farnesyl Diphosphate Synthase 277 590 IPR008949 -
Vvi19g0096 590 PANTHER OS04G0344100 PROTEIN-RELATED 23 580 - -
Vvi19g0096 590 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 29 136 IPR008930 -
Vvi19g0096 590 SFLD Isoprenoid Synthase Type I 262 588 - -
Vvi19g0096 590 SFLD Terpene Cyclase Like 1 C Terminal Domain 262 588 IPR034741 -
Vvi19g0096 590 Coils Coil 48 72 - -
Vvi19g0096 590 Pfam Terpene synthase family, metal binding domain 267 533 IPR005630 GO:0000287|GO:0010333|GO:0016829
Vvi19g0096 590 CDD Terpene_cyclase_plant_C1 23 587 IPR044814 GO:0010333|GO:0016102
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0096 Vvi-Chr19 1127075 1130037 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0096 K15803 K14183 vvi:100243606 1100.5