Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0095 ATGAATTCGAACAAGGAAAATAAGAACAACTATAAGGCTTTCTTCTTAGGCTTTCCGATATCAGGGCAAAACATGTCTGTCTCACTTCCCGTCACTCCTATTCCAACCACCCAAAGGGTTCATCATCAGGAGGTGGCTCGCTCCACTGCAAACTATCCTCCTAACATTTGGGGTGATCGTTTCCTCACCTACGCTCCTGATGATACGGTAACCCAGGAATGTAAAGCACAGAAAATAAAAGAACTGAAAGAAGAAGTGAGAAAGGAGCTAAAAGCCAGTGCCCATAAGTCTCCAGAACTGCTGAAGTTGATAGATTCCATCCAACTCTTAGGATTGACATACCACTTCGAAAGGGAGATTGAAGAAGCATTGAAAGACATGTATGGAACATATAGTCTGGTTGATGATAATGAGGACCTCACAAATGCCTCTCTCCGGTTCCGGCTACTAAGACAAGAAGGTTACGGCGTTCCATCTGATGTATTTAGTAAGTTCAAAGACAAGGAAGGCAACTTCAAGGAATCTTTGATTGGTGATTTACCCGGCATGCTAGCTTTATATGAAGCTACACACTTGATGGTGCATGGAGAAGACATACTAGAGGAAGCCCTGGCTTTCACCACTGCCCATCTTCAGTCCGTGGCAACTGATCCAAATAATCCTCTCTCAAAACAAGTGATTCGTGCACTAAAGCTGTCCATTCACAATGGCGTGACTAGTGTAGGGGCAAGGCACTACATTTCCATCTACCAAGAAGATGGTTCGCATAATGAATCTTTACTCAAGCTTGCAAAGTTGGATTTCAACCTGTTGCAGTCACTCCATAGGAAAGAGCTAAGTGAGATCACTAGGTTCTTAACGAAAGTGGCCATCATGATAACCATGGTGGATGATATATATGATGCATACGGTACAATTGAAGAGCTCACACTCCTTACAGAAGCAATTGAAAGATGGGATGCCAGCAGCATAGATCAACTTCCAGATTACATGAAATGCTTTTATCGGGCATTACTGGATCTTTATGAAGAAATGGAGCAAGAGATGGCCAAGGAAGGAAAATTATACCGTGTTCACTACGCAAAAGAACTGATGAAAAAGCAAATCCAATCCTACTTTGTTGAAGCCAAATGGTCGAATCAAGGATATATACCAACATTCGATGAGTATATGAGTAATGGAGTAGTAAGTGGTTGTTGCTCTTTGCTCATTGCCACATCTTTCGTTGGCATGGGAGATATAGTAACCAAGGAGTCCTTCCAGTGGGTGCTCAGCCGCCCCACGATGATTGGAGCTTCACAGATCATTTGCAGGCTCATGGATGACATGGCTTCCCACGAGTTTGAGCAAAAAAGGGTGCACGTTGCTTCTAGTGTTGAATGCTATATGAAGCAATATGGTGTTTCAAAGCAGGAGGCGTATGATGAGTTGAATAAGCAAGTAGTCAAGGCATGGAAGGATATTAACCAGGAGTGCCTCAAACCTACACCAGTGCTGATGCCAATCATCACACGTGTTCTAAATATTGCCCGTATGATGAATATCTTGTACAAGGATGGAGATGAGTTCACCCATGTTGGAAAACAGAGGAAAGATCTCATTGCATCGATCCTCATAGACCCCGTGCCAATGTAA 1635 0.4312 MNSNKENKNNYKAFFLGFPISGQNMSVSLPVTPIPTTQRVHHQEVARSTANYPPNIWGDRFLTYAPDDTVTQECKAQKIKELKEEVRKELKASAHKSPELLKLIDSIQLLGLTYHFEREIEEALKDMYGTYSLVDDNEDLTNASLRFRLLRQEGYGVPSDVFSKFKDKEGNFKESLIGDLPGMLALYEATHLMVHGEDILEEALAFTTAHLQSVATDPNNPLSKQVIRALKLSIHNGVTSVGARHYISIYQEDGSHNESLLKLAKLDFNLLQSLHRKELSEITRFLTKVAIMITMVDDIYDAYGTIEELTLLTEAIERWDASSIDQLPDYMKCFYRALLDLYEEMEQEMAKEGKLYRVHYAKELMKKQIQSYFVEAKWSNQGYIPTFDEYMSNGVVSGCCSLLIATSFVGMGDIVTKESFQWVLSRPTMIGASQIICRLMDDMASHEFEQKRVHVASSVECYMKQYGVSKQEAYDELNKQVVKAWKDINQECLKPTPVLMPIITRVLNIARMMNILYKDGDEFTHVGKQRKDLIASILIDPVPM* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0095 544 Gene3D Farnesyl Diphosphate Synthase 54 284 IPR008949 -
Vvi19g0095 544 SFLD Terpene Cyclase Like 1 C Terminal Domain 285 542 IPR034741 -
Vvi19g0095 544 Gene3D - 95 256 IPR036965 GO:0010333|GO:0016829
Vvi19g0095 544 Coils Coil 76 96 - -
Vvi19g0095 544 SUPERFAMILY Terpenoid synthases 256 542 IPR008949 -
Vvi19g0095 544 FunFam Isoprene synthase, chloroplastic 282 532 - -
Vvi19g0095 544 CDD Terpene_cyclase_plant_C1 47 541 IPR044814 GO:0010333|GO:0016102
Vvi19g0095 544 PANTHER OS04G0344100 PROTEIN-RELATED 284 533 - -
Vvi19g0095 544 Gene3D Farnesyl Diphosphate Synthase 285 542 IPR008949 -
Vvi19g0095 544 Pfam Terpene synthase family, metal binding domain 285 487 IPR005630 GO:0000287|GO:0010333|GO:0016829
Vvi19g0095 544 Pfam Terpene synthase, N-terminal domain 56 230 IPR001906 GO:0010333|GO:0016829
Vvi19g0095 544 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 53 256 IPR008930 -
Vvi19g0095 544 FunFam Isoprene synthase, chloroplastic 95 256 - -
Vvi19g0095 544 SFLD Isoprenoid Synthase Type I 285 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0095 Vvi-Chr19 1119812 1123564 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0095 K15803 - vvi:100260714 996.497