Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0091 ATGGGAGGAGGATTTAGGGTGCTTCATCTTGTCAGGCCATTTCTTTCTTTCCTGCCAGAAGTTCAGAGTGCTGACCGGAAAGTCCCATTTAGAGAGAAGGTTATATACACTGTGATCTCTCTCTTCATCTTTTTGGTATGCAGTCAGCTACCACTGTATGGAATACACTCCACGACAGGGGCTGATCCATTCTATTGGATGCGTGTTATTCTTGCCTCAAACCGTGGAACTGTTATGGAGTTGGGGATCACCCCAATTGTGACTTCTGGACTGGTGATGCAACTCTTGGCCGGGTCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTTGAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGTTGCATATGTTCTCTCAGGAATGTATGGCAGCGTTAGCCAACTTGGAGTTGGAAATGCCATCCTTATTATCGTCCAACTCTGTTTTGCTGGTATCATTGTGATATGTTTAGATGAACTTCTGCAGAAAGGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCGTGGAGCTGAATTTGAAGGTGCCGTTATTGCTCTCTTCCATCTGCTAATAACTCGGACAGATAAGGTTCGAGCTCTACGGGAGGCTTTCTATCGACAGAACCTTCCAAATGTGACGAATTTGCTTGCAACAGTCTTGATCTTCCTTATTGTTATCTACTTCCAAGGGTTCCGGGTGGTTTTGCCTGTGAGGTCAAAGAATGCTCGTGGACAGCAGGGTTCATATCCTATTAAGCTGTTCTACACCTCCAACATGCCCATCATTTTACAGTCTGCTCTTGTTTCCAACCTTTACTTTATATCCCAGTTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAGTGGAAGGAATCTGAATATTCGGGTGGTCAATACATCCCTGTTGGTGGTCTTGCTTATTATATAACTGCACCATCAAGCTTGGCTGATATGGCAGCCAATCCTTTCCATGCTCTATTCTATCTAATCTTTATGTTGGCTGCCTGTGCACTTTTCTCAAAAACTTGGATTGAAGTATCTGGATCCTCTGCCAGAGATGTGGCTAAGCAGCTCAAAGAACAACAAATGGTGATGCCTGGGCATCGGGAGGCCAACTTGCAGAAAGAGCTAAATCGCTACATACCCACTGCTGCAGCCTTCGGGGGTATGTGTATCGGTGCATTGACTGTGCTGGCCGATTTCATGGGTGCAATTGGCTCGGGCACAGGAATTTTACTTGCAGTGACCATTATTTATCAATACTTTGAAACATTTGAGAAGGAGCGAGCCAGCGAGCTTGGCTTCTTTGGGTTCTAA 1431 0.45 MGGGFRVLHLVRPFLSFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAVGEAVAYVLSGMYGSVSQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLYRRYSGNFLVNLLGKWKESEYSGGQYIPVGGLAYYITAPSSLADMAANPFHALFYLIFMLAACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREANLQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0091 476 FunFam Transport Sec61 subunit alpha isoform 2 9 474 - -
Vvi19g0091 476 Gene3D SecY subunit domain 9 474 IPR023201 -
Vvi19g0091 476 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 18 470 IPR002208 GO:0015031|GO:0016020
Vvi19g0091 476 Pfam Plug domain of Sec61p 42 76 IPR019561 -
Vvi19g0091 476 PIRSF SecY_Sec61alpha 8 471 IPR002208 GO:0015031|GO:0016020
Vvi19g0091 476 Pfam SecY 77 459 IPR002208 GO:0015031|GO:0016020
Vvi19g0091 476 SUPERFAMILY Preprotein translocase SecY subunit 10 466 IPR023201 -
Vvi19g0091 476 ProSitePatterns Protein secY signature 1. 77 96 IPR030659 -
Vvi19g0091 476 NCBIfam preprotein translocase subunit SecY 31 467 IPR002208 GO:0015031|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0091 Vvi-Chr19 1062778 1066338 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0091 1 476 Miscellaneous Gene Families AT2G34250 93.277 0.0 907
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0091 K10956 - vvi:100250458 932.169