Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0085 ATGGGTGGGCGGAGAATGGCTGAGGCCACCGGAAAAATGACCCAACTCTGCCGGAAAATTGTGCGGGTCAATATTAGGGTTAGGATACTAGACAGAGTAACGATTTTTCAGAAGTTTTTTAGGTTCATTTGGGACAGAATTATCGTTTGCTCCATAGGGAAGCCAATTCGGTACCACCGGCTGTCCCGCCGCTCTCCTCCTCCATCGCCGTCGCCGGAGACGATCGAGTCCGGGTTGCAGTCGGATGACCCGTCGACAGCTGCCGGAGACAGCGATTCCGATTTAGTGAGCTTGAAGATATGCGTGATGGGGGATTGCCAAATTGGAAAAACCAGCTTCCTCATTAAGTATGTAGGTGATGAACAAGAAAAAAAATGTTTAGAAATGACGGGATTGAATTTAATGGACAAAACATTAATCGTCCAAGACGCCCGAATTGCATTCAGCATATGGGATGTCGGAGGTGATCATACTTCACTTACTCATGTTCCAATCGCTTGCAAAGACGCAGTGGCGATCCTGTTCATGTTCGATCTTACCAGTCGATGTACACTAAACAGTGTAATTGGATGGTATAGCCAAGCAAGAAGGTGGAATCAGACGGCGATCCCGATCATGATTGGAACCAAATTTGATGATTTTGTGAAACTTCCTCCGGACTTACAAAGGCCGATCGTGACCCAGGCAAGAGGATATGCCAGGGCTATGAAGGCAACACTCTTCTTCTCAAGTGCCACACACAACATAAATGTGAACAAAATCTTCAAATTCATCATGGCCAAGCTCTTCAATCTGCCATGGACTGTCCAAAGAAACTTAACCATCGGAGAACCCATCATAGACTTCTGA 849 0.4641 MGGRRMAEATGKMTQLCRKIVRVNIRVRILDRVTIFQKFFRFIWDRIIVCSIGKPIRYHRLSRRSPPPSPSPETIESGLQSDDPSTAAGDSDSDLVSLKICVMGDCQIGKTSFLIKYVGDEQEKKCLEMTGLNLMDKTLIVQDARIAFSIWDVGGDHTSLTHVPIACKDAVAILFMFDLTSRCTLNSVIGWYSQARRWNQTAIPIMIGTKFDDFVKLPPDLQRPIVTQARGYARAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTVQRNLTIGEPIIDF* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0085 282 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 273 IPR027417 -
Vvi19g0085 282 PIRSF GTPase_Tem1 4 282 IPR017231 -
Vvi19g0085 282 ProSiteProfiles small GTPase Rab1 family profile. 92 282 - -
Vvi19g0085 282 MobiDBLite consensus disorder prediction 74 91 - -
Vvi19g0085 282 MobiDBLite consensus disorder prediction 61 91 - -
Vvi19g0085 282 PANTHER - 95 270 - -
Vvi19g0085 282 SMART rab_sub_5 98 265 - -
Vvi19g0085 282 PRINTS Transforming protein P21 ras signature 98 119 - -
Vvi19g0085 282 PRINTS Transforming protein P21 ras signature 240 262 - -
Vvi19g0085 282 PRINTS Transforming protein P21 ras signature 139 161 - -
Vvi19g0085 282 PRINTS Transforming protein P21 ras signature 200 213 - -
Vvi19g0085 282 SMART rho_sub_3 100 264 IPR001806 GO:0003924|GO:0005525
Vvi19g0085 282 FunFam Septum-promoting GTP-binding protein 1 88 272 - -
Vvi19g0085 282 Pfam Ras family 99 262 IPR001806 GO:0003924|GO:0005525
Vvi19g0085 282 Gene3D - 87 273 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0085 Vvi-Chr19 1012206 1014254 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0085 K07976 - vvi:100257144 546.584