Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0083 ATGCGAGGGGCTGCCTTAGCTGGGTCATGCAGGCGATGCTGTAATATATCTATGGGAGAAGTTCATCCACTCCGAGGTGCCAATGGTACTTTACCTGGTGTCATTGTTTTTAATAATACACTTCAGCGTGGGCAAAGTTTGAGTTATTGTAGGAGGCCATTTATTCAACTTAAGAAAAATGGTGAAGCCAATTGTTGTCGCTCACCTCATCATACGAAGCATGCAATTTGTTTTTCTACCTCATCAGTTTTAATACTCCCTCGCTATCCCAATTGGATTTGTGCTGAAAGAAAATGCTTTACAAGGGGTTTGGTTAACCTGCAGCATCTGCATGGCCCAGTAGAGCCAGAGGTAGGTTTTATTCCTCCTCGTGGGGCTGTTGGTTTTGGTGCTACTTCAGGGGTGACTAGGTGCAGTAACCCTGGGAGCATCTGGATTGAGGAGGCCAATAAACTGGTTGAAATAAAAAGGCAAATTTCACAAGATGGCAATGCTTATGTAAGGTCAAGCATATTTACTAAGTATCGTAGTTCAAATTCAAATGGTATTACCAGAAAAGGAAATTTGCAAAGCTCAGTAGGGCAAGGATGTATTGATCATGGCCAATTAAAAGCTCAAACTCACGGTCCGCTATATAATTCTAGTGTTCAGGGGCAAATATTTGCTGGGGACATAGGATGTGAAACAATGACTAATGACTGTGCTTCAAATGTGCTAGCTTACCCTGAAAAAATACAGGCAGGCAACAAGCATATTTCCAGGAATAATGTAAACAGTACTGCACCTCATCACTCAAGGAAGGTTGTTCAGTCTAATGGGTCACTGTCAATGAAGCCTTTGGAGGATAGGGAAGAGGCAAATTTCATATTTTCTCGGGATAGAGCTGCTGATGCAATTGAAAATGACGAATCCAATGAAAGATCCATAATACCTGCTACGGGAACACATGCTTTTTCTCAGTTGGAGGCTCGCAGGAAGCTTTCTAAGATCTATGAAAAAGTTCTCATAGTTGATGATATCTATGTTGCAAAAAAAATTGTCAGGAAGCTCACCACTCAGTACAAGCATCTTATCCATGCATGTGACACAGAGGTGGCCAACATTGATGTGAAGCGGGAAACACCTGTTGATCATGGAGAGATAATATGCTTCAGTATTTATTCTGGACCTGAAGCAGATTTTGGAAATGGAAAGTCTTGTATCTGGGTAGATGTTCTTGATGGTGGTGGGAGGGATCTTTTGGTTGAATTTGCTCCATTTTTTGAAGACCCATCAATCCAAAAGGTTTGGCACAACTATAGTTTTGACAACCATGTTATAGAGAACTATGATCTCAAAGTTTCAGGTTTTCACGCTGACACAATGCATATGGCACGGTTGTGGGATTCTTCAAGACGGGCAGTTGGTGGATATTCTCTTGAAGCACTTACACGTGACTCAAAAGTCATGTCTGGTGCTCACATGTCTAATGGAGAAGAATTGATTGGCAAAGTATCAATGAAAACCATCTTTGGCAAGAAAAAACTGAAGAAGGATGGAACTGAAGGTAAAATTATCACCATTGCTCCAGTAGAAGTGCTACAAAGAGAGGATCGGAAACCATGGATTAGTTACTCTGCATTGGATTCAATGAGCACACTCAAGCTTTATGAGAGCATGAAAAACAAACTGTTGGACAAGGAATGGCTTCTTGATGGGGCTCGTAAAGGATGCATGTTTGACTTCTATCAGAAATACTGGAGGCCCTTCGGTGAGCTTCTAGTTCAAATGGAAACTGAGGGGATGCTGGTAGATCGAGCCTACCTTTCTAAGGTGGAGAAAGTAGCCAAAGCAGAGGAACAGGTTGCTGCCAACAGATTTCGCAATTGGGCATCTAAGCATTGCCCTGATGCTAAGTACATGAATGTGGGAAGTGATACACAATTGCGCCAGCTCTTATTTGGTGGCGTTGCAAACAGAAAGGATCCCAATGAGTGTCTTCCAATGGAGAAAACTTTTAAGATTCCCAATGTTGACAAAGTGATTGAAGAAGGCAAAAAGGCACCCACAAAATTTCGGAATATTACACTAAGTAGCTTTGATGTTGAGATACCAATTGAGATGTGCACAGCATCTGGCTGGCCCTCAGTTAGTGGAGATGCCTTGAAGACCCTTGCAGGGAAGGTCTCTGCAGACTTTGATTTTATTGATGATGCTGAATGTGACTTTGAGACTACTGCCATAGAAAAGATTGATGAAGTTCCTGGAACACGAGGACCAAAAGAGAGTGAGGACACAGACATATCTGCTTATGGAACAGCTTATGCTGCTTTTGGGGAGGGGCAGGAGGGGAGGAAGGCTTGCCATGCCATTGCTGCTTTATGTGAAGTTTGCTCTATTAACTCTTTGATATCCAATTTCATCCTCCCATTGCAGGATGGTGAAATATCTGGCAAGAATGGGCGTATTCATTGTTCGCTTAATATCAACACAGAAACTGGGCGCTTGTCAGCTAGGAGACCAAATTTGCAGAACCAACCTGCTTTAGAGAAGGACCGGTATAAGATCCGCCAAGCATTTATAGCTGCACCTGGAAACTCCCTTATTGTTGCTGATTACGGACAGCTGGAACTTAGGATTCTTGCACATCTTGCCAACTGTAAAAGCATGTTGAATGCTTTCAAAGCTGGTGGAGATTTCCATTCTAGGACTGCAATGAATATGTATCCACATATTCGTGAAGCTGTTGAAAAAAGAGAAGTGCTTCTTGAGTGGCATCCTCAACCTGGTGAAGACAAACCTCCAGTTCCTCTGTTGAAGGATGCTTTTGGTTCAGAAAGAAGGAAAGCAAAAATGCTCAACTTTTCCATTGCCTATGGAAAAACTGCAGTAGGGCTTGCCCGGGATTGGAAGGTGTCTGTGAGAGAAGCAAGGGAAACTGTTGAACGCTGGTATAAAGAGAGGAAAGAAGTGCTTGCTTGGCAAGAAAAACGTAAAAAAGAAGCTACAACTTTAAAATATGTTTGCACATTGCTAGGACGGGCCCGGTCTTTCCCTTCGGTGCATCATGCTACTGCTTCTCAAAGAGGCCACATTGAGCGAGCTGCCATAAATACCCCAGTGCAGGGTAGTGCTGCTGATGTTGCCATGTGTGCCATGTTAGAAATATCGAGGAATGCACGCTTAAAGGAGCTTGGATGGAAGCTGCTTTTACAGGTTCACGACGAAGTCATCCTGGAGGGACCAACAGAGTCGGCTGAAGTTGCTAAGGCAATCGTTGTGGAGTGCATGGAAAAACCCTTTGACGGCAAGAATATTCTTAGTGTCGACCTTGCTGTTGATGCTAAATGTGCCCAGAACTGGTACTCTGCCAAGTAG 3357 0.4319 MRGAALAGSCRRCCNISMGEVHPLRGANGTLPGVIVFNNTLQRGQSLSYCRRPFIQLKKNGEANCCRSPHHTKHAICFSTSSVLILPRYPNWICAERKCFTRGLVNLQHLHGPVEPEVGFIPPRGAVGFGATSGVTRCSNPGSIWIEEANKLVEIKRQISQDGNAYVRSSIFTKYRSSNSNGITRKGNLQSSVGQGCIDHGQLKAQTHGPLYNSSVQGQIFAGDIGCETMTNDCASNVLAYPEKIQAGNKHISRNNVNSTAPHHSRKVVQSNGSLSMKPLEDREEANFIFSRDRAADAIENDESNERSIIPATGTHAFSQLEARRKLSKIYEKVLIVDDIYVAKKIVRKLTTQYKHLIHACDTEVANIDVKRETPVDHGEIICFSIYSGPEADFGNGKSCIWVDVLDGGGRDLLVEFAPFFEDPSIQKVWHNYSFDNHVIENYDLKVSGFHADTMHMARLWDSSRRAVGGYSLEALTRDSKVMSGAHMSNGEELIGKVSMKTIFGKKKLKKDGTEGKIITIAPVEVLQREDRKPWISYSALDSMSTLKLYESMKNKLLDKEWLLDGARKGCMFDFYQKYWRPFGELLVQMETEGMLVDRAYLSKVEKVAKAEEQVAANRFRNWASKHCPDAKYMNVGSDTQLRQLLFGGVANRKDPNECLPMEKTFKIPNVDKVIEEGKKAPTKFRNITLSSFDVEIPIEMCTASGWPSVSGDALKTLAGKVSADFDFIDDAECDFETTAIEKIDEVPGTRGPKESEDTDISAYGTAYAAFGEGQEGRKACHAIAALCEVCSINSLISNFILPLQDGEISGKNGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLNAFKAGGDFHSRTAMNMYPHIREAVEKREVLLEWHPQPGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTAVGLARDWKVSVREARETVERWYKERKEVLAWQEKRKKEATTLKYVCTLLGRARSFPSVHHATASQRGHIERAAINTPVQGSAADVAMCAMLEISRNARLKELGWKLLLQVHDEVILEGPTESAEVAKAIVVECMEKPFDGKNILSVDLAVDAKCAQNWYSAK* 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0083 1118 Gene3D Taq DNA Polymerase; Chain T, domain 4 593 818 - -
Vvi19g0083 1118 PANTHER DNA POLYMERASE I 313 1118 IPR002298 GO:0003887|GO:0006261
Vvi19g0083 1118 SMART polaultra3 848 1078 IPR001098 GO:0003677|GO:0003887|GO:0006260
Vvi19g0083 1118 Pfam DNA polymerase family A 783 1115 IPR001098 GO:0003677|GO:0003887|GO:0006260
Vvi19g0083 1118 Pfam 3'-5' exonuclease 413 557 IPR002562 GO:0003676|GO:0006139|GO:0008408
Vvi19g0083 1118 CDD DNA_pol_A_plastid_like 706 1115 - -
Vvi19g0083 1118 SUPERFAMILY DNA/RNA polymerases 572 1118 IPR043502 -
Vvi19g0083 1118 CDD DNA_polA_I_Ecoli_like_exo 354 589 - -
Vvi19g0083 1118 PRINTS DNA-polymerase family A (pol I) signature 838 853 IPR002298 GO:0003887|GO:0006261
Vvi19g0083 1118 PRINTS DNA-polymerase family A (pol I) signature 815 837 IPR002298 GO:0003887|GO:0006261
Vvi19g0083 1118 PRINTS DNA-polymerase family A (pol I) signature 890 903 IPR002298 GO:0003887|GO:0006261
Vvi19g0083 1118 PRINTS DNA-polymerase family A (pol I) signature 860 883 IPR002298 GO:0003887|GO:0006261
Vvi19g0083 1118 PRINTS DNA-polymerase family A (pol I) signature 1061 1074 IPR002298 GO:0003887|GO:0006261
Vvi19g0083 1118 PRINTS DNA-polymerase family A (pol I) signature 1031 1047 IPR002298 GO:0003887|GO:0006261
Vvi19g0083 1118 Gene3D - 335 591 IPR036397 GO:0003676
Vvi19g0083 1118 Gene3D - 869 1038 - -
Vvi19g0083 1118 FunFam DNA polymerase I 335 591 - -
Vvi19g0083 1118 Gene3D - 824 1114 - -
Vvi19g0083 1118 SUPERFAMILY Ribonuclease H-like 336 563 IPR012337 -
Vvi19g0083 1118 MobiDBLite consensus disorder prediction 253 273 - -
Vvi19g0083 1118 FunFam DNA polymerase I 869 1038 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0083 Vvi-Chr19 980055 997226 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0083 K02335 - vvi:100257153 2254.94