Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0078 ATGGAAGTGCAACTTGTGAAAGACGGTGCACAACAGATAGAGCAGGAAGCTGGAGAGAGAAGATATTTTTCAAGATTAAGTTTCCTAAGCCAATTTGAAGCGAATATGAACAAGGTAGATGAGATGTTTGAGTTGGGGAATTTTCCTAATGAGATTTTAATTGATGTACATCAAGATGAAGGAAATGCATTGTTAACAGCACAGCTAATAGGTGAAACTACAGCCAAAAGAAATTTGGAGAACATTTGGACATGCTTAGAGAAAGGTGAAATCCAAAGCATTGGAGTTTGGGGAATGGGAGGGATTGGCAAACAACTGTCGTTACTCATATTCACAATCGGCTCTTGGAAAATAGGGACACTTTCGGCCATGTCTNNNNNNNNNNNNNNNNNNNNNNNNNTTCGTAGGTTGCAGGATGCTATTGCTAGAAAAATATATTTAGATTTCTCAAAAGAGGAAGATGAAAAGATAAGAGCTGCTTTATTATCAAAAGCATTGCTAAGGGAAAAGAAATTTGTTCTTGTATTAGATGATGTATGGGAAGTTTATGCCCCACGGGAGGTTGGAATTCCAATTGGAGTTGATGGAGGAAAACTGATCATAACCACCAGATCAAGGGATGTGTGCCTAAGAATGGGATGCAAAGAAATTATCAAAATGGAACCACTTTCTGAGGTAGAAGCATGGGAGCTTTTCAACAAAACACTTGAGCGGTACAATGCACTGAGTCAAAAAGAAAAAGAAATAGCCAAGGATATTATCAAGGAATGTGGCGGTTTGCCTCTTGCCATTGTCACTACAGCTAGAAGTATGAGTGTTGTGTATAGCATTGCTGGATGGAGAAATGCATTGAATGAGTTGAGGGAACATGTTAAAGGGCACACAATCGACATGGAAAAGGATGTATTTAAAATATTGGAATTCAGCTACAATCGCTTGAATAATGAAAAACTTCAAGAATGTTTATTGTACTGTGCATTGTTTCCTGAAGATTATGAGATTAGAAGAGTGTCTTTGATCGGATACTGGATTGCTGAGGGGTTGGTAGAAGAAATGGGAAGTTGGCAAGCAGAGCGTGATAGAGGGCATGCTATATTGGACAAACTTGAAAATGTGTGTTTGTTGGAAAGATGTCATAATGGAAAATATGTAAAGATGCATGATGTGATCAGGGACATGGCTATCAACATAACGAAAAAGAATTCTCGATTCATGGTGAAAATCATAAGAAATCTGGAAGATCTCTCAAGCAAGATAGAGTGGTCAAATAATAATGTAGAAAGAGTTTCATTAATGCCAAGCGACGAACTTTCAACTTTGATGTTTGTACCAAACTGGCCTAAGCTTTCCACCCTGTTTCTTCAAAAAGACAAGTTTCCTAGTCCATTTCAGCATACTCTAGATAGTCTTCCAAATTCCTTCTTTGTGCACATGCTGGGCCTTAGAGTTCTGGACCTGTCATGCACAAACATTGCATTGCTACCAGATTCTATCTATGACAAAGTGAATCTTCGAGCTCTAATTCTTTGTTATTGTCCAAATTTAAAGCGGGTAGGTTCATTGGCAAAGCTTAAAGAATTAAGAGTGTTGGATATCAGTGAAAATGAAATGGAAACAATACCTGATGGTATAGAGAAATTGGTCCACCTTAAACATTTTCGTTGGTCCTTATCTCTCGACTGTTTCAATCCTCTTTCCAATCCTCTTTCCAATCTTTTTTCCAATCTTGTTCAACTGCAGTGTCTAAGACTTGTTGATCGAAGACTTCCGGATGTAGGAGTGGAGGAGCTGAGTGGGTTGAGAAAGTTGGAGATCCTTGAAGTCAAGTTTTCCAGTCTACACAATTTCAATAGCTACATGATGACAGAACACTACCGAAGACTTACTCACTATCATGTTGGATTAAATGGATTCGGACATTTTCAATCACGACTAAATGGAAGTTGTAAAGAAGTAACAGTGAATGCATGTAATCTGGAAGGAGGAAAAGACAATGATGACTACCATCTTGTGCTCCCTACCAATGTCCAGTTTTTCAAGATAGAAGAATGCCATCTTCCCACTGGCTTATTGGACGTTTCTCAATCCCTCAAGATGGCGACAGATTTAAAAGCATGTTTGATATCAAGATGCAAGGGGATAGAATACTTGTGGTCGGTAGAGGACTGCATTGCCTCATTAAACACATTGTGTCTTCATAAATTGCCAAGCTTAAGGGTTCTCTTCAAATTGAGACCAAGCGATATTGTAAGTTGTTCCAGTCTCAAGAGATTGCACGTGAGTAACTGTGACAATCTCAAGCACTTGTTCACGCCTGAGTTAGTGAAGTACCACCTCAAAAACCTTCAAAGCATTCATGTCCACAATTGCAGCCAAATGGAGGATCTAATAGTAGCAGCAGAGGTAGAAGAAGAAGAAGAAGAAGAAGTCATTAATCAAAGGCGTAATCTCATCCTCTGTTTCCCAACCTTACAGAGTTTGATATTGGAAGGTCTACCAAAATTGAAGAGCATATGGAAGGGAACAATGACTTGTGATTCTCTACAACTTACAGTATGGAATTGCCCAGAGCTTAGAAGGCTTCCTCTTTCTGTGCAAATAAACGATGGTAGTGGAGAAAGACGAGCTTCAACACCGGCCCTCAAACAAATCAGAGGACAAAAAGAGTGGTGGGATGGGTTGGAATGGAACACACCTCATGCCAAATCTATATTTGAACCCTTTACTACGTTTCAAACGGACGAGAATCCTTTTACGGAGCTTTGA 2766 0.3897 MEVQLVKDGAQQIEQEAGERRYFSRLSFLSQFEANMNKVDEMFELGNFPNEILIDVHQDEGNALLTAQLIGETTAKRNLENIWTCLEKGEIQSIGVWGMGGIGKQLSLLIFTIGSWKIGTLSAMSXXXXXXXXXRRLQDAIARKIYLDFSKEEDEKIRAALLSKALLREKKFVLVLDDVWEVYAPREVGIPIGVDGGKLIITTRSRDVCLRMGCKEIIKMEPLSEVEAWELFNKTLERYNALSQKEKEIAKDIIKECGGLPLAIVTTARSMSVVYSIAGWRNALNELREHVKGHTIDMEKDVFKILEFSYNRLNNEKLQECLLYCALFPEDYEIRRVSLIGYWIAEGLVEEMGSWQAERDRGHAILDKLENVCLLERCHNGKYVKMHDVIRDMAINITKKNSRFMVKIIRNLEDLSSKIEWSNNNVERVSLMPSDELSTLMFVPNWPKLSTLFLQKDKFPSPFQHTLDSLPNSFFVHMLGLRVLDLSCTNIALLPDSIYDKVNLRALILCYCPNLKRVGSLAKLKELRVLDISENEMETIPDGIEKLVHLKHFRWSLSLDCFNPLSNPLSNLFSNLVQLQCLRLVDRRLPDVGVEELSGLRKLEILEVKFSSLHNFNSYMMTEHYRRLTHYHVGLNGFGHFQSRLNGSCKEVTVNACNLEGGKDNDDYHLVLPTNVQFFKIEECHLPTGLLDVSQSLKMATDLKACLISRCKGIEYLWSVEDCIASLNTLCLHKLPSLRVLFKLRPSDIVSCSSLKRLHVSNCDNLKHLFTPELVKYHLKNLQSIHVHNCSQMEDLIVAAEVEEEEEEEVINQRRNLILCFPTLQSLILEGLPKLKSIWKGTMTCDSLQLTVWNCPELRRLPLSVQINDGSGERRASTPALKQIRGQKEWWDGLEWNTPHAKSIFEPFTTFQTDENPFTEL* 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0078 921 Gene3D - 222 309 IPR042197 -
Vvi19g0078 921 Pfam NB-ARC domain 77 311 IPR002182 GO:0043531
Vvi19g0078 921 Gene3D - 57 219 IPR027417 -
Vvi19g0078 921 SUPERFAMILY L domain-like 385 862 - -
Vvi19g0078 921 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 35 879 - -
Vvi19g0078 921 FunFam Probable disease resistance protein At1g63360 310 396 - -
Vvi19g0078 921 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 77 325 IPR027417 -
Vvi19g0078 921 Gene3D - 310 392 IPR036388 -
Vvi19g0078 921 Gene3D Ribonuclease Inhibitor 746 870 IPR032675 -
Vvi19g0078 921 SMART LRR_typ_2 478 501 IPR003591 -
Vvi19g0078 921 SMART LRR_typ_2 524 547 IPR003591 -
Vvi19g0078 921 Gene3D Ribonuclease Inhibitor 393 666 IPR032675 -
Vvi19g0078 921 PRINTS Disease resistance protein signature 166 180 - -
Vvi19g0078 921 PRINTS Disease resistance protein signature 257 271 - -
Vvi19g0078 921 PRINTS Disease resistance protein signature 522 538 - -
Vvi19g0078 921 PRINTS Disease resistance protein signature 93 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0078 Vvi-Chr19 929691 938363 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0078 K13459 - vvi:104877551 1543.48