Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0075 ATGGAGCCAAACACGTTATACCGTAACCTTCGATTCGATGATTACCCACCAGATGACCTGATCTCTGACAAGGCTTCAGGAGAGGTTCAGGAACTCAGGGAAGGCAGTGAGCCTATGCTAACTGATAATTGTGTCAAACACGAAAAAATTCAACTTAGAGATTGTGAAAGCAAATCACCTAAAAGCACTGGGGTAGATAATGATGTGCTAAATGATTCGTTTGTTGGCCATAAGAAACCAGGTAAATATTTTTATTACGACTTGCCACTTTCTGAAGAAACTGGGCCTTGGATACCTGTCTCTGTGCCTCCCATGTTGGAGGGTGAAAATGAAGAATGGAGTAAAGCCCTCGGTGTAAATGGGGGTTACCTTCCGGATGGAGACATGGGATGGAATCAGTTAATTGGCGAAGATAAGGAGCTGACCATGTGGGATGTGGTTACTGATATGTTACTTGCGGCCCAAGGGAAAGTGAATGCTATCGCTTCAGGAGATATCCATAGATGTAGAGTCTCATGGATATCGAACCATCTTCTTGAGCAAGCTTGGAAAGAGATGGCTGAAACTCTTACGGAGGTTAATTTGAGTAACATAAAGGAAATTATTGAAGCAGATCCACCAAAATGGTTGCCTGACAGTGCCGCTTCTGCTTGCATGCTGTGTAATGTGCGTTTCCATCCTATAATGTGCTCCAGGCACCACTGTCGATTTTGTGGGGGGATATTTTGTAATGAATGCTCTAAGGGGAGGAGTTTGTTGCCTATAAAGTTCCGCTCTGGGAACCCACAACGGGTCTGTGATGTCTGCTGTGTGAGGCTTGAATCTGTTCAGTCATACCTAATGGACCAAGTAAGTCGAGCTGCCCAGTCGCCAACCTATGACCTGACAGACCTCAGCACTTTGAGATCATGGCTTAATTTTCCATGGGGCCAGTCTATGGAATATGAGATTTATAAGGCAGCAAACACCATTCGGGGTTATAATAAGGTTGGCTCTCTTACACCTGAAAAGTCAATACCAGAGGCCATTCTAAAACAGGCAAAAGGCCTTGCAATCCTTACTGTTGCAAAGGTCGGCGTGATGGTGACTTATAACATTGGAACAGGGCTGGTCATTGCTCGTAGAGAAGATGGATCTTGGTCTCCCCCGTCTGCCATTTCTTCCTTTGGTATTGGTTGGGGAGCTCAGGCTGGAGGAGAATTAACAGACTTCATAATCGTGTTAAGAACAAACAATGCTGTCAAGACATTTAGTGGAAATATGCACTTCTCAGTTGGAGCAGGTTTGAGTGCTGCTGTGGGTATTGCTGGACGTTCTGCTGAAGCTGATGTTCGTGCTGGTGATGGTGGTTATGCTGCTTGCTATACCTACAGCTGCTGTAAAGGTGCATTTGTTGGGTGCTCCCTCAAAGGGAACATTGTCACAACCCGCTCACAAGAAAATTGCAGATTTTATGGCAACCCATCAATTAGTGCATCAGATATTCTTCTTGGGTCACTGCCTAGGCCTCCTGCAGCTGCCACTCTCTATCATGCACTGTCTGATCTATTCCTCAAGTTTGAGAGGTGA 1569 0.4532 MEPNTLYRNLRFDDYPPDDLISDKASGEVQELREGSEPMLTDNCVKHEKIQLRDCESKSPKSTGVDNDVLNDSFVGHKKPGKYFYYDLPLSEETGPWIPVSVPPMLEGENEEWSKALGVNGGYLPDGDMGWNQLIGEDKELTMWDVVTDMLLAAQGKVNAIASGDIHRCRVSWISNHLLEQAWKEMAETLTEVNLSNIKEIIEADPPKWLPDSAASACMLCNVRFHPIMCSRHHCRFCGGIFCNECSKGRSLLPIKFRSGNPQRVCDVCCVRLESVQSYLMDQVSRAAQSPTYDLTDLSTLRSWLNFPWGQSMEYEIYKAANTIRGYNKVGSLTPEKSIPEAILKQAKGLAILTVAKVGVMVTYNIGTGLVIARREDGSWSPPSAISSFGIGWGAQAGGELTDFIIVLRTNNAVKTFSGNMHFSVGAGLSAAVGIAGRSAEADVRAGDGGYAACYTYSCCKGAFVGCSLKGNIVTTRSQENCRFYGNPSISASDILLGSLPRPPAAATLYHALSDLFLKFER* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0075 522 Pfam Las17-binding protein actin regulator 390 514 IPR007461 -
Vvi19g0075 522 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 286 IPR013083 -
Vvi19g0075 522 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 212 274 IPR017455 -
Vvi19g0075 522 Pfam FYVE zinc finger 208 273 IPR000306 GO:0046872
Vvi19g0075 522 CDD SYLF_FYVE 315 516 - -
Vvi19g0075 522 SMART fyve_4 204 275 IPR000306 GO:0046872
Vvi19g0075 522 FunFam Zinc finger family protein 198 280 - -
Vvi19g0075 522 SUPERFAMILY FYVE/PHD zinc finger 207 283 IPR011011 -
Vvi19g0075 522 PANTHER SH3YL1 PROTEIN 172 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0075 Vvi-Chr19 884896 893400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0075 209 274 EF-hand Containing Proteins AT3G14270 32.394 9.13e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0075 K20523 - vvi:100246883 1078.54