Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0073 ATGGACGACTCCAAAATTCTCGACAACGATAGAATCGACAAGATGGATCGCGGGTTTGTCAACGATCTCGACGAATTTCGCAATTTCAGTGGTAAAAATGATGTGAATTTGGGTGGGTTCGCCAATGTGCTTAAACTCTTTCTGCTAAAAAATGTTGGCCATGGAGTTGATACGCTTTTCTTAGCTCGAAAATTCCGAGAAACAAACACTCGGAGAACTTGCAGTTGCGGCCGGCTTTGGGATGGGAATGGAAATGGGGTTGAAGAAAGAAGAAAGAAGTCTGAGTTTTCTTCGCAAAACAACCAAAAGGTATGTGAAGAACCCGAAATTAAGGCATCTCAACCAAGTTTATTTCGATATGGTAGTACCAGTCAAAGGAAGGAGGACTACATCAATGTGTCAAAGGGGCTCTATCATGAATTCCCTCTAAACTTCATCACTTTCTTAGCAATTTTGCTGATGAAATCATTAGGGTTTCAAATTAATCTTCTGGTTACCTTCCTTAAATTTCCACTCTATCTATCATACTTCTGGTTCATGTTGATGATGTTTCCATTCCAAACTTTAAAGCATATTAGAAGTTATCTGATGAAAAAAGTTACTAGAATGTGGGATACTTTATCTACTAGTGTTACTTCCTTTGTATTTGTGCGCATAAACGCGCCAAAATCAGTGGTGAAGATGGCAGTGAGGATGAGCAGGGCGTTTTTATGCTCAATCTATGTCTGCTGTGTGCTAATCGGATTACTGGTTTCGGGTTTTCTGATGGGGATTTTGTTGATGCGAACTATAGTCGAGGAGCCGGTTCAGGCAACGAGGACACTAAATTTTGATTACACAAAAGCCAGTCCGGTTGCTTTTGTCCCAATGATATCTCAAAATTTGCCATTAGACTTGGTTGCGGGAGACGAAGATGTCAAGAATGTTCAAGCTCGTGCCATTCCATACAACCATAATTTGCAGCTCACTGTCTCATTGACACTGCCTGAATCCGAATACAATCAGAAGCTCGGGGTTTTTCAGGTAAAGGTGGAGTTCTTGTCCACAAATGGCGAGGTCACTGCAACACAAAGCCATCCATGCATTCTGAGGTACAAAAGCCAACCAATCCGCCATATCCAAACCTTCATCATGGCCGGTCCTCTTCTCGCTGGCTTCGAGTCTGAATCCCAAACTCTGAACATAAAAATGGCCGAATTCACCGAAGGCCTTGAGCCAACTGCCTGCCTGAAGGTGTCCCTGGTGCAGCGCGCAGAATTCCAACCTGGCGCCGGTATCCCTGAGATTCATGCAGCAACAGTAGCCCTTGAGTCTGAGCTCCCTCAACTGAAAAGGGTGATTTGGATTTGGAGGAGGACTATTCTTGTATGGGCAAGTTTTGTGTTATTCTTGATGGAGTTGGTTCTTATGCTGGTCATCTACAGGCCTATTATCATTCCAAGGGGAAGGCAGCAGCAGGCGAGATTGGTAGGCATTAAAGAAGATTGTCAGCCAAAAGCCATCGCCTGGTATAAGGGCATGGTGTTGATGATGATCATGGCTTGA 1545 0.4375 MDDSKILDNDRIDKMDRGFVNDLDEFRNFSGKNDVNLGGFANVLKLFLLKNVGHGVDTLFLARKFRETNTRRTCSCGRLWDGNGNGVEERRKKSEFSSQNNQKVCEEPEIKASQPSLFRYGSTSQRKEDYINVSKGLYHEFPLNFITFLAILLMKSLGFQINLLVTFLKFPLYLSYFWFMLMMFPFQTLKHIRSYLMKKVTRMWDTLSTSVTSFVFVRINAPKSVVKMAVRMSRAFLCSIYVCCVLIGLLVSGFLMGILLMRTIVEEPVQATRTLNFDYTKASPVAFVPMISQNLPLDLVAGDEDVKNVQARAIPYNHNLQLTVSLTLPESEYNQKLGVFQVKVEFLSTNGEVTATQSHPCILRYKSQPIRHIQTFIMAGPLLAGFESESQTLNIKMAEFTEGLEPTACLKVSLVQRAEFQPGAGIPEIHAATVALESELPQLKRVIWIWRRTILVWASFVLFLMELVLMLVIYRPIIIPRGRQQQARLVGIKEDCQPKAIAWYKGMVLMMIMA* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0073 514 Pfam Putative adipose-regulatory protein (Seipin) 248 462 IPR009617 GO:0019915
Vvi19g0073 514 PANTHER BERNARDINELLI-SEIP CONGENITAL LIPODYSTROPHY 2 HOMOLOG BSCL2 PROTEIN 103 486 IPR009617 GO:0019915
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0073 Vvi-Chr19 865947 867580 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0073 K19365 - vvi:100265810 1015.76