Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0032 ATGGCATCCTTTTTGCCGGAAATTGTCCTGACTAGCTCCCCTGATGGCCCCATTATTGCGTATGATCCTTACTCAGGTGCCATCATAGCTCACTTCACTGGAAGCCGATCACCCCCGAAAGGCCTCACCCTTGCTGGAAAGGGCCTCATTGCGGCCTCCCATATCTCAGCCACCGGTGCAGGCTCAATCAACCTCTATAACTGGTGGTCTTCTGCGGTCTTCAACCACCTCCCTCTCCCTGAACCAGTGGCTCCGCTTGCTGCCACTCTTGACGGTGCATACCTCTTTGCTGGGGGACTTTCTGGCCACATTTATTCCATCTCACTGCCCTCAGGGAAGACAATTCAAACGTTTCCTGCACATTCCAAGTCTGTCTCCTGCCTTGAAATCAACGATGATGGGTCTCTCCTCATATCTGGTAGTGACGATGGCTCCATTGTAGTAGCCCCAATCTTCCAGCTTGTGGCGACCTCACCAGATGGCACATGCAAGTTCTGGAGCCTCCCCCAAGGGCTCCTGCTGCGCACGGTGGCTCTCCCGTGTCCCATGGCAGGCCTGGCAATCGACCCAACCGAGTCCCATTTCTACGCTGCAGGGTCAGATGGCTCAATCTACATTGGAGCAACAAAGTCCCCAACCCGACAACTGACCAAACGAAACCTGCAAGTGATCAAATGGCGTGAGAAGCATGGTGGGCCAGTAGTATCATTGGCAATGCTGAATCAGGGGCGGAACCTGGTGTCAGGATCGGAAGACGGGAATGTCTGGATCTGGGAGGTGGAGAAAGGGCAGGTGATGACGGTGCTGGGCAATGAGATGGTGAGCATCAGCGACCTGGTGATGGCCAGGGGGGTGGCTAATAGTAGAGGGAGCAGTTCCAATCTGGGAATAAACATGGAAGAATGGAGGGAGAAGTCAGGATTAGCAGCAAGGGAGCTTAGCAGGCCAGTGAGGAAGATGGAAGAAATGAAAGAGAAGCTGGGGGTGGCAGTGAAGGACAGGAGTAGAGCCATTGATATACTTGAATCAGCCATTGGAGCATATGAAAGGCTGTTGGAACTCATTCTCAAGGAAGCCAAGGGAGGCACTGGCAACAAGAGTGGAGGAAAAGAGAAAGAAAGTATGTGA 1128 0.531 MASFLPEIVLTSSPDGPIIAYDPYSGAIIAHFTGSRSPPKGLTLAGKGLIAASHISATGAGSINLYNWWSSAVFNHLPLPEPVAPLAATLDGAYLFAGGLSGHIYSISLPSGKTIQTFPAHSKSVSCLEINDDGSLLISGSDDGSIVVAPIFQLVATSPDGTCKFWSLPQGLLLRTVALPCPMAGLAIDPTESHFYAAGSDGSIYIGATKSPTRQLTKRNLQVIKWREKHGGPVVSLAMLNQGRNLVSGSEDGNVWIWEVEKGQVMTVLGNEMVSISDLVMARGVANSRGSSSNLGINMEEWREKSGLAARELSRPVRKMEEMKEKLGVAVKDRSRAIDILESAIGAYERLLELILKEAKGGTGNKSGGKEKESM* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0032 375 ProSiteProfiles Trp-Asp (WD) repeats profile. 118 148 IPR001680 GO:0005515
Vvi19g0032 375 ProSitePatterns Trp-Asp (WD) repeats signature. 246 260 IPR019775 -
Vvi19g0032 375 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 8 264 IPR011047 -
Vvi19g0032 375 PANTHER WD-REPEAT PROTEIN 18 6 156 IPR045227 -
Vvi19g0032 375 ProSiteProfiles Trp-Asp (WD) repeats profile. 227 268 IPR001680 GO:0005515
Vvi19g0032 375 Pfam WD domain, G-beta repeat 230 258 IPR001680 GO:0005515
Vvi19g0032 375 Pfam WD domain, G-beta repeat 112 147 IPR001680 GO:0005515
Vvi19g0032 375 Gene3D - 6 148 IPR015943 GO:0005515
Vvi19g0032 375 FunFam Uncharacterized protein 146 289 - -
Vvi19g0032 375 Gene3D - 152 280 IPR015943 GO:0005515
Vvi19g0032 375 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 227 264 - -
Vvi19g0032 375 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 118 148 - -
Vvi19g0032 375 SMART WD40_4 170 208 IPR001680 GO:0005515
Vvi19g0032 375 SMART WD40_4 111 150 IPR001680 GO:0005515
Vvi19g0032 375 SMART WD40_4 220 259 IPR001680 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0032 K14829 - vvi:100265919 726.857