Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0028 ATGGAGATATCGAATGAGTCAGCTATTAAGAAACCGAAGAGGCTAACATCTGTTGTATGGAATCATTTTGAAAGGGTTAGGAAGGCAGACATCTGTTATGCTGTTTGCATACACTGTAACAAAAGGCTTAGTGGATCAAGTAATAGTGGAACTACACATCTGAGAAATCATTTAATGCGTTGTCTGAAAAGGTCTAATTATGATGTGTCCCAACTACTTGCGGCAAAGAGAAGGAAAAAAGAAGGTGCTCTTAGCCTTACAGCTATCAATTATGACGAAGGGCAAAGAAAAGAGGAGAATATAAAGCCTACAATTCTGAAGTTTGATCAAGAGCAAAAAAAAGATGAGCCCATCAACCTTGGAAGTATTAGATTTGATCAGGAACGGAGTCGGCTGGATCTTGCCCGCATGATCATATTACATGGTTATCCCCTGGCCATGGTCAACCATGTTGGGTTCAAAGTATTTGTTAAGGATCTGCAGCCACTGTTTGAAGTCAATAGTGCCATTGAGCTTGATTGCATGGAAATTTATGGGAAAGAGAAACAGAAAGTGTATGAGGTTATGAGCAGATCGCATGGCAGAATTAATCTTGCTGTCGATATGTGGACTTCCCCTGAACAGGCTGAATATTTGTGTTTGACAGCACACTATATTGACGAGGATTGGAAATTACAAAAGAAGATACTGAATTTTGTCTCCCTCGATCCTTCTCATACTGAAGACATGCTCTCTGAAGTTATTATTAAGTGTCTGATGGAGTGGGAGGTTGGCCATAAGTTGTTTTCCATGACATTTCATGATTGTGCCACGAACGATGACGTCGCCCTAAGAGTTAAAGAGCACTTCTCCCAGGACAGGCCTCTCTTGGGCAGTGGTCAATTACTTGATGTGCGCTGTGTAGGTCATGTTCTAAATTTGATTGTTCAAGATTGCATTGAAGCACTTAGGGAGGTAACCCACAAGATCCGAGAAAGTGTTCGGTATGTCAAAACCTCACAGGCAACATTAGGAAAATTCAATGAGATTGCCCAACAAGTTGGAATCAATAGTCAGCAAAACTTGTTTCTTGATTGTCCAACTCAATGGAACTCAACATATCTCATGCTTGACAGAGTGTTAGAATACAAGGGGGCATTTTCTCTCTTGCAAGAGCATGACCCAGGCTACACAGTTGCTCTATCTGATACAGAGTGGGAATGGGCAAGTTCCATTACTAGCTATATGAAACTTCTTCTTGAAATTATCGCCGTCTTGTCCAGCAACAAATGCCCAACTGCAAATATATATTTTCCTGAGATTTGTGACATTCACATCCAATTGATCGAATGGTGCAAGAGTCCTGATGATTTTATTAGTTCTTTGGCACTGAAGATGAAAGCCAAGTTTGATAAATATTGGAGCAAGTGTAGTTTAGCTTTGGCAGTAGCCGTAATCTTAGATCCCCGATTCAAGATGAAACTGGTGGAGTATTACTATCCACAGATCTATGGTACTGATGCTGCAGATCGGATCAAGGATGTTTCTGATGGGATCAAGGAACTTTTCAATGTATACTGCTCCACCTCTGCTTCACTGCATCAAGGTGTAGCTCTCCCTGGCAGCAGCTTGCCTAGTACTAGTAATGATTCAAGGGATCGACTAAAGGGCTTTGACAAATTCATCCACGAAACTTCCCAGAATCAAAACATAGTATCTGATCTGGACAAATATTTGGAGGAGCCAGTATTTCCCCGCAACTGTGATTTCCACATACTAAATTGGTGGAAAGTCCAGAAGCCAAGGTACCCTATCTTATCTATGATGGTACGCGACGTTCTGGGGATTCCCATGTCCACTGTTGCCCCTGAGGTTGTGTTCAGCACAGGAGCTAGGGTTCTAGATCATTATCGTAGTTCCCTCAACCCAGATACCCGACAAGCGTTGATCTGCACACAAGACTGGTTGCAGACCGGATTAGAAGAACCCAACCAATCCTCACCCCACCAAACCTCACCCCACCCTGCTATCCCTCTTGCAATCGAAGCAAATTAG 2034 0.4238 MEISNESAIKKPKRLTSVVWNHFERVRKADICYAVCIHCNKRLSGSSNSGTTHLRNHLMRCLKRSNYDVSQLLAAKRRKKEGALSLTAINYDEGQRKEENIKPTILKFDQEQKKDEPINLGSIRFDQERSRLDLARMIILHGYPLAMVNHVGFKVFVKDLQPLFEVNSAIELDCMEIYGKEKQKVYEVMSRSHGRINLAVDMWTSPEQAEYLCLTAHYIDEDWKLQKKILNFVSLDPSHTEDMLSEVIIKCLMEWEVGHKLFSMTFHDCATNDDVALRVKEHFSQDRPLLGSGQLLDVRCVGHVLNLIVQDCIEALREVTHKIRESVRYVKTSQATLGKFNEIAQQVGINSQQNLFLDCPTQWNSTYLMLDRVLEYKGAFSLLQEHDPGYTVALSDTEWEWASSITSYMKLLLEIIAVLSSNKCPTANIYFPEICDIHIQLIEWCKSPDDFISSLALKMKAKFDKYWSKCSLALAVAVILDPRFKMKLVEYYYPQIYGTDAADRIKDVSDGIKELFNVYCSTSASLHQGVALPGSSLPSTSNDSRDRLKGFDKFIHETSQNQNIVSDLDKYLEEPVFPRNCDFHILNWWKVQKPRYPILSMMVRDVLGIPMSTVAPEVVFSTGARVLDHYRSSLNPDTRQALICTQDWLQTGLEEPNQSSPHQTSPHPAIPLAIEAN* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0028 677 MobiDBLite consensus disorder prediction 653 677 - -
Vvi19g0028 677 ProSiteProfiles Zinc finger BED-type profile. 14 69 IPR003656 GO:0003677
Vvi19g0028 677 SUPERFAMILY Ribonuclease H-like 190 650 IPR012337 -
Vvi19g0028 677 SMART bed5 14 64 - -
Vvi19g0028 677 Pfam Domain of unknown function (DUF4413) 420 519 IPR025525 GO:0003677
Vvi19g0028 677 SUPERFAMILY beta-beta-alpha zinc fingers 17 64 IPR036236 -
Vvi19g0028 677 Pfam BED zinc finger 17 60 IPR003656 GO:0003677
Vvi19g0028 677 PANTHER BED FINGER-RELATED 173 651 IPR045259 -
Vvi19g0028 677 Pfam hAT family C-terminal dimerisation region 567 649 IPR008906 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0028 Vvi-Chr19 338699 340814 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0028 - - vvi:104877478 1378.23