Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0025 ATGGCTACACACACACCCAAGAACATCCTCATTACGGGGGCTGCTGGATTCATTGCATCCCATGTTGCTAACCGGCTTATCAGGAATTACCCAGACTACAAGATTGTTGTGCTTGACAAGCTTGATTACTGTTCGAATCTCAAGAACCTCCTTCCCTCTAAATCATCCCCTAACTTTAAGTTTGTCAAGGGAGACATTGGCAGTGCTGACCTTGTCAACTTCCTTCTCATCACTGAGTCCATTGACACAATAATGCACTTTGCAGCCCAGACTCATGTTGACAACTCCTTTGGTAACAGCTTTGAGTTCACCAAAAATAATATCTATGGTACTCATGTCCTTCTAGAAGCCTGCAAAGTCACTGGCCAGATCAGGAGATTCATCCATGTTAGCACAGATGAAGTCTATGGAGAGACAGATGAAGATGCTGTTGTAGGAAACCATGAGGCTTCTCAACTCCTTCCGACAAACCCATACTCAGCAACAAAAGCTGGTGCAGAAATGCTTGTTATGGCCTATGGTAGGTCGTATGGCTTACCTGTTATAACTACCCGAGGGAACAATGTTTATGGGCCCAATCAATTTCCTGAGAAATTAATTCCAAAGTTCATCCTCTTGGCAATGAGAGGAAAGCCTCTTCCAATACATGGGGATGGAAGTAATGTGCGTAGTTATCTCTACTGTGAGGATGTTGCTGAGGCTTTTGAAGTCATTCTTCACAGAGGAGAGGTTGGCCATGTGTACAACATTGGGACTAAGAAAGAAAGGAGGGTGATTGATGTGGCCAAAGATGTATGCAACCTCTTCTCAATGGACCCAGAGACAAGCATAAAGTTTGTGGAGAATAGACCATTTAATGACCAAAGATACTTTCTAGATGATCAGAAGCTAAAGATCTTGGGCTGGTCAGAGCGGACTACATGGCAAGAGGGGCTGAAGAAGACAATGGAATGGTATATCAACAATCCTAATTGGTGGGGTGATGTCTCTGGAGCATTGCTTCCTCATCCAAGAATGCTGATGATGCCTGGTGGGATTGAAAGACATTTTGATGGCTCCGAAGATAGTGATTCTACAGCTTCTCCTGTCTCAAGTAATCTTAACCAGACCAGAATGGTGGTACCAGTTCCCAAAAGCGTCAGTTCTCCCCGCAAGCCATCCTTGAAGTTCTTGCTTTATGGTAGGACTGGGTGGATTGGGGGTCTACTTGGAAAGCTGTGTGAGAAGCAAGGGATTCCATATGAGTATGGAAGAGGGCGTCTAGAGGATCGGGCATCTCTCTTGGCGGATATTCAGAATGTTAAGCCAACACATGTTTTTAATGCTGCTGGCGTGACTGGCAGACCCAATGTTGATTGGTGTGAATCTCATAAACCAGAAACAATCCGCGCCAACGTTGCTGGAACTCTGACCTTGGCAGATGTTTGCAGAGAACATGGACTCCTAATGATGAATTTTGCTACTGGGTGTATATTTGAGTATGATGCTGCACATCCAGAGGGTTCTGGCATCGGATTTAAAGAGGAAGACACACCAAATTTTGCCGGTTCTTTCTATTCAAAAACCAAGGCCATGGTTGAGGAACTCTTAAAAGAATTTGACAATGTTTGCACCCTCAGAGTTCGAATGCCAATATCATCTGACCTCAACAACCCACGCAACTTCATTACAAAGATCTCTCGTTATAACAAAGTGGTTAACATCCCAAACAGCATGACCGTCCTGGATGAGCTTCTACCCATTTCAATTGAAATGGCAAAGCGTAATTGCAGGGGTATATGGAACTTCACAAACCCTGGAGTTGTAAGCCATAATGAGATTCTCGAGATGTACAAGAGTTACATCGACCCCAACTTTAAGTGGGCCAACTTCACACTGGAAGAGCAGGCCAAGGTTATAGTTGCCGCCCGAAGCAATAATGAGATGGATGCCTCCAAGTTGAAAAATGAGTTCCCTGAGTTGCTCCCAATCAAGGACTCATTGATCAAGTATGTATTTGAGCCCAATCAGAAAAGCCTTGCAGCATAA 2028 0.4433 MATHTPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLLPSKSSPNFKFVKGDIGSADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMRGKPLPIHGDGSNVRSYLYCEDVAEAFEVILHRGEVGHVYNIGTKKERRVIDVAKDVCNLFSMDPETSIKFVENRPFNDQRYFLDDQKLKILGWSERTTWQEGLKKTMEWYINNPNWWGDVSGALLPHPRMLMMPGGIERHFDGSEDSDSTASPVSSNLNQTRMVVPVPKSVSSPRKPSLKFLLYGRTGWIGGLLGKLCEKQGIPYEYGRGRLEDRASLLADIQNVKPTHVFNAAGVTGRPNVDWCESHKPETIRANVAGTLTLADVCREHGLLMMNFATGCIFEYDAAHPEGSGIGFKEEDTPNFAGSFYSKTKAMVEELLKEFDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNCRGIWNFTNPGVVSHNEILEMYKSYIDPNFKWANFTLEEQAKVIVAARSNNEMDASKLKNEFPELLPIKDSLIKYVFEPNQKSLAA* 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0025 675 CDD dTDP_GD_SDR_e 7 324 IPR005888 GO:0008460|GO:0009225
Vvi19g0025 675 CDD dTDP_HR_like_SDR_e 389 661 - -
Vvi19g0025 675 Gene3D - 380 674 - -
Vvi19g0025 675 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 387 661 IPR036291 -
Vvi19g0025 675 Gene3D - 200 322 - -
Vvi19g0025 675 Pfam RmlD substrate binding domain 389 560 IPR029903 -
Vvi19g0025 675 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 332 IPR036291 -
Vvi19g0025 675 Gene3D - 9 313 - -
Vvi19g0025 675 FunFam Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase 379 675 - -
Vvi19g0025 675 Pfam GDP-mannose 4,6 dehydratase 10 315 IPR016040 -
Vvi19g0025 675 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 3 338 - -
Vvi19g0025 675 FunFam UDP-glucose 4,6-dehydratase 9 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0025 Vvi-Chr19 288669 290812 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0025 8 324 Miscellaneous Gene Families AT4G00110 26.844 6.85e-20 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0025 K12450 - vvi:100260586 1356.66