Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0021 ATGCAGTCTTCACTCTCATTTCCTCATGCAAGAAGAGGTTTGAACTTTGCGCCCAAACCAAATCCCACAACAACCCATCCACCATTTCCCAAATCGCCACTCCTTTTCTTCTCCAATCCCACCGATTCTTCATCATCTTCACATCAACTCAGGCTCACATCACTGTCTCAACCACACCCACCAAGAAATGAACCCCTTTTCACAACACCCACTGAGTCCATTTCAACAAGAAGACGCACCAGGCTGGTATCTTTTGTTGCTCCACTTCACAGTAGAATTCCATTGAATGGAAAATCCCATGGGAGTAGGAGCTTCCGGGGTTGGATTGAAGTGGTGGGGGAAGCTTTGTCTACTGCATTTCCTGTATGGGTGGCACTGGGGTGCCTGCTAGGCCTCATCAGGCCAAGTTCCTTCAACTGGGTTCAACCCAAATGGACTGTTCTTGGCATCACTGTCACCATGCTTGGCATGGGCATGACCCTTACCTTTGATGATCTTTGCAAAGCCTTGGCCATGCCTAAGGAATTGCTAGCTGGTTTTGTTCTCCAGTACACGGTGATGCCATTGTTGGGATTTGCTGTCAGCAAGCTCTTGAAGTTGCCCTCCTATTATGCAGCTGGCCTAATACTGGTTGGCTGCTGCCCTTGCGGAACTTCAAGTAACATCGTCACATACATTGCACGGGGAAATGTGGCTCTTTCAGTGCTAATGACAGCAGCGAGCACTCTATCTGCTGTGGTCATGACCCCATTTCTCACAGCCAAACTTGCTGGGCAATTTGTTGCAGTAGATGCAGTAGGCCTTCTTATGTCCACACTACAGATTGTGCTTCTTCCTGTATTGGGTGGTGCATTTCTTAATCAGTACTTTCAAGGCCTGGTTAAATTTGTTTCTCCTGTGATGCCCACCATTGCTGTTGTAACTGTAGCTGTTCTATGTGGGAATGCAATTGCCCAGAATGCTTCTGCAATTCTTATGTCTGGTCGACAAGTGGTGTTAGCTGCAGCCCTTCTTCATGCATCAGGATTCTTCTTCGGTTACATTCTTTCCAGGATCCTGGGACTTGATGTGTCATCCTCTCGCACCATCTCTATTGAAGTTAGCATGCAGAACTCGGTACTTGGAGTAGTTCTTGCTACTCAGCACTTTGGAAATCCACTGACAGCTGTACCATGTGCCGTCTCCAGCGTCTGTCATTCAGTCTTTGGAAGTGTCTTAGCAGGAATTTGGAGACGTTCCCCACCTGTCAAAGTGCAGGACTGA 1263 0.4774 MQSSLSFPHARRGLNFAPKPNPTTTHPPFPKSPLLFFSNPTDSSSSSHQLRLTSLSQPHPPRNEPLFTTPTESISTRRRTRLVSFVAPLHSRIPLNGKSHGSRSFRGWIEVVGEALSTAFPVWVALGCLLGLIRPSSFNWVQPKWTVLGITVTMLGMGMTLTFDDLCKALAMPKELLAGFVLQYTVMPLLGFAVSKLLKLPSYYAAGLILVGCCPCGTSSNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQFVAVDAVGLLMSTLQIVLLPVLGGAFLNQYFQGLVKFVSPVMPTIAVVTVAVLCGNAIAQNASAILMSGRQVVLAAALLHASGFFFGYILSRILGLDVSSSRTISIEVSMQNSVLGVVLATQHFGNPLTAVPCAVSSVCHSVFGSVLAGIWRRSPPVKVQD* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0021 420 PANTHER SODIUM-BILE ACID COTRANSPORTER 102 416 IPR004710 -
Vvi19g0021 420 Pfam Sodium Bile acid symporter family 148 324 IPR002657 GO:0016020
Vvi19g0021 420 Gene3D - 106 413 IPR038770 -
Vvi19g0021 420 MobiDBLite consensus disorder prediction 36 73 - -
Vvi19g0021 420 MobiDBLite consensus disorder prediction 1 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0021 Vvi-Chr19 244905 265338 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0021 44 420 Organic Solute Cotransporters AT1G78560 70.361 0.0 523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0021 K03453 - vvi:100257142 753.051