Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0018 ATGGCGGAAGCGCTGATCTCCAACCCGGAAGCCAATACTCAGGAAAATGGTCCCTACTCGGCTTCGCCGGACCCGTCTTCAACTGGGTCCTTCTTCCACAGAAGAATCGAGTTTCATCTCGCAAGAAAGCCTTTCTCCGGCTTCACTAACGGCGGCGGAGGTTTTCGACTAGAGACTCTGAACCCCACCACCGATCCGAAGCGGCCCGGGCACAGTACGGGTCCGGCGGCTTCGAGTGGGAAGAAGCAAGATGGGTCTGATCATGTGGAGAACGGGTTGGATCCGGAGCTCAGTATTGGGATCACATTTAGGAGAATTGGTGCTGGTTTGGAAAATCTGGGAAATACCTGTTATCTTAATTCAGTATTGCAATGCCTGACTTATACAGAGCCTTTAGCAGCATATTTGCAAAGTGGAAAGCATCAAAATTCTTGTCGTATTGCTGGATTTTGTGCTTTATGTGCTATCCAGAAGCATGTCAGCCGTGCTCTTCAGTCAACTGGAAGAATATTAGTACCCAAGGATCTTGTCTCTAACTTACGGTGCATATCTCGTAACTTCAGAAATGCAAGACAGGAGGATGCACATGAGTATATGGTACATTTGCTTGAAACAATGCACAAATGTTGCTTACCTTCAGGTGTGCCAAGTGAATCCCCTAGTGCTTATGAGAAAAGTTTGGTGCACAAGATCTTTGGTGGTCTCCTTCGTAGTCAGGTGAAATGCATGCAGTGCTCCTACTGCTCCAACAAATTTGATCCATTTCTAGATTTGAGTCTTGAAATATTCAAAGCAGATTCCTTGCATAAGGCCCTTGTGCACTTCACAGCAACAGAACAATTAGATGGTGGTGAGAGACAGTACCAATGTCAGCGGTGCAAACAGAAAGTTAAGGCTCTTAAACAGCTCACAGTTCACAAGGCACCTTATGTTCTGACCATCCATCTAAAGCGGTTTGGTGCACATGATCCTGGACAAAAGATTGACAAGAAAGTTCATTTTGGTCCTACAATGGACTTAAAACCTTTTGTCAGTGGTTCCTATGAAGAAAATTTGAAGTATACTCTTTATGGGGTTTTGGTCCATGCCGGTTGGAGCACCCATTCCGGCCACTACTACTGCTTTGTTCGCACTTCAACTGGCATGTGGTACTCCCTTGATGACAATCGGGTTGTCCAGGTTAGTGAGAGGACTGTTTTGGATCAGAAGGCCTACATGTTGTTTTATGTTCGTGATAGAAAAAACTTCACTCCAAAGAAATCCATTGATGTTGTTCAGAAACAAAACTTGGTTGTGAGTGCCATAGCAAAGAAAACATGTTCCAGTATAAGTCAAGGTATAAAGGAAACCATTCAAAATCGACCAGTCGAGAAAAGTTTAAGTGGTGCCATTGCTTCTGCTGCTGTAACCACAAATGATGTATCTAATGTTGGCTTGTCAAAGGAGATTCTATCAAAAGAAGCATCAGCTCCAAAAAGTAGCAGGTTCTCATCTGAATGCTTGGCATTGAAAAATGGTCCCATGTCTGAACCTCCACCTAATGTAGCATTATCAAAACAGCGAGTGAAGGAGCCTTCTGTTCTGAACCCTACTCTGGAGAAATCCATGCCACCATCAGCTCCATCTGTTAAGGGAAGTGGTATCACCAATCTTGACAATGCTGTTGCAGCTTCAACTGGTGCCAAATTTAATGTGCGCAGTGAGGATGAAATTTCTAAGAAAGATCAGGGCATCTTAGATGTCATACAAGCCAACTGCCTCGGTTCCCATAATTCTGCTGCCGATAAGCCTGACTCAGAGAAGACCTCTCCGAAGGCAATTGGAAATTCCATTCCCTTTGCGGTTGGTATTATTTCAAATGCAAATGGAACATTGGAGAAAATAGAACCTGTTAAGTTTCCAAATGGTCCAGGTGGTGAAAGTTTTCAGGTTGGTAGTATACCCAAAGGGAGTGCTGCTGGTGATTTACTTATTGAAAACGTTGATGATGGTGGCCAGAAATTATCAACCAAGTCAGTAGAATTTTCTAGCCCGCCAAGCATGATGAATGGATCTATCCACATGAAAACACTTGATTGCAAGCCTCACAGAAAACTAAAAAAGAAGCACATGAAGAGAAGCATGCATCTTGTCTCAAACAACCTCTTCCGAGCATCCTTGAGCCTGCGAAAGAAGAAAAAGCAGAGAAGGAGCAAACGGCACACTTCTGACATCAAGAATCTCACTCAAGAACGCTTACTGGAAGCAGGTTGTTTATCTATTGATCAGGGCCCATCCACATCTGATAAAACCCAGACAATTTCTGTGGGTCCAACTAATCCTCAGGGAAAAAGGGTTAAGCATGGTACCAAAAAGGGAGATAAGAGAACTGCTGGGAAGGATGTAAAAACCTCTAATAGTGAATGTCTGATGGATACCATGGATATGGAGATCAGAGACAGAATTGGTCAGGAGGGAGCAATGCTTGCAACAGATAAAGAACCACAAAAGAGCTCTAGCTCAGTTGCAAAACAGTGGGATGCACAAGGTTCTGATAGTTTAAATGATAGTAAGAGAGATCGGATGCAGAATGGATTGATGAGTATGCTTACCAGAGGTCTAGACAAGACAATTGTTGCTCGGTGGGACGAGATAGAATGGCCTTCAAACCGGGTTATGGAATCAAGAAGTGTGGAGGGTGTAACCATCGGTTATGTACCAGATGAATGGGACGAAGAATATGATCGGGGCAAGAGAAAGAAAGTAAGGAGCTCCAAAGGTAGCTTTGGTGAACCTAATCCTTTTCAAGAAATTGCGACCAAGAAGGCACATTTTAAAAAGGCAAAGATGGATCGGTCCAGCTCCAGAAACCAACCACTCAGGATGTGA 2868 0.439 MAEALISNPEANTQENGPYSASPDPSSTGSFFHRRIEFHLARKPFSGFTNGGGGFRLETLNPTTDPKRPGHSTGPAASSGKKQDGSDHVENGLDPELSIGITFRRIGAGLENLGNTCYLNSVLQCLTYTEPLAAYLQSGKHQNSCRIAGFCALCAIQKHVSRALQSTGRILVPKDLVSNLRCISRNFRNARQEDAHEYMVHLLETMHKCCLPSGVPSESPSAYEKSLVHKIFGGLLRSQVKCMQCSYCSNKFDPFLDLSLEIFKADSLHKALVHFTATEQLDGGERQYQCQRCKQKVKALKQLTVHKAPYVLTIHLKRFGAHDPGQKIDKKVHFGPTMDLKPFVSGSYEENLKYTLYGVLVHAGWSTHSGHYYCFVRTSTGMWYSLDDNRVVQVSERTVLDQKAYMLFYVRDRKNFTPKKSIDVVQKQNLVVSAIAKKTCSSISQGIKETIQNRPVEKSLSGAIASAAVTTNDVSNVGLSKEILSKEASAPKSSRFSSECLALKNGPMSEPPPNVALSKQRVKEPSVLNPTLEKSMPPSAPSVKGSGITNLDNAVAASTGAKFNVRSEDEISKKDQGILDVIQANCLGSHNSAADKPDSEKTSPKAIGNSIPFAVGIISNANGTLEKIEPVKFPNGPGGESFQVGSIPKGSAAGDLLIENVDDGGQKLSTKSVEFSSPPSMMNGSIHMKTLDCKPHRKLKKKHMKRSMHLVSNNLFRASLSLRKKKKQRRSKRHTSDIKNLTQERLLEAGCLSIDQGPSTSDKTQTISVGPTNPQGKRVKHGTKKGDKRTAGKDVKTSNSECLMDTMDMEIRDRIGQEGAMLATDKEPQKSSSSVAKQWDAQGSDSLNDSKRDRMQNGLMSMLTRGLDKTIVARWDEIEWPSNRVMESRSVEGVTIGYVPDEWDEEYDRGKRKKVRSSKGSFGEPNPFQEIATKKAHFKKAKMDRSSSRNQPLRM* 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0018 955 MobiDBLite consensus disorder prediction 755 797 - -
Vvi19g0018 955 MobiDBLite consensus disorder prediction 528 547 - -
Vvi19g0018 955 MobiDBLite consensus disorder prediction 821 852 - -
Vvi19g0018 955 MobiDBLite consensus disorder prediction 906 955 - -
Vvi19g0018 955 MobiDBLite consensus disorder prediction 720 740 - -
Vvi19g0018 955 MobiDBLite consensus disorder prediction 7 29 - -
Vvi19g0018 955 SUPERFAMILY Cysteine proteinases 107 411 IPR038765 -
Vvi19g0018 955 Coils Coil 724 744 - -
Vvi19g0018 955 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 108 412 IPR028889 -
Vvi19g0018 955 MobiDBLite consensus disorder prediction 933 949 - -
Vvi19g0018 955 Pfam Ubiquitin carboxyl-terminal hydrolase 109 409 IPR001394 GO:0004843|GO:0016579
Vvi19g0018 955 MobiDBLite consensus disorder prediction 826 845 - -
Vvi19g0018 955 MobiDBLite consensus disorder prediction 52 91 - -
Vvi19g0018 955 FunFam Ubiquitin carboxyl-terminal hydrolase 23 106 418 - -
Vvi19g0018 955 MobiDBLite consensus disorder prediction 532 547 - -
Vvi19g0018 955 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 109 124 IPR018200 GO:0004843|GO:0006511
Vvi19g0018 955 Gene3D Cysteine proteinases 105 422 - -
Vvi19g0018 955 MobiDBLite consensus disorder prediction 720 734 - -
Vvi19g0018 955 MobiDBLite consensus disorder prediction 1 30 - -
Vvi19g0018 955 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 354 372 IPR018200 GO:0004843|GO:0006511
Vvi19g0018 955 MobiDBLite consensus disorder prediction 755 773 - -
Vvi19g0018 955 CDD Peptidase_C19E 107 410 - -
Vvi19g0018 955 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 75 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0018 Vvi-Chr19 202365 210949 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0018 108 485 Miscellaneous Gene Families AT2G24640 39.583 2.35e-71 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0018 K11855 - vvi:100246880 1867.82