Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0015 ATGGCACTTTCATCCTCAAAGCACTGGCCCTTCTCACCAACCCAAGACAGTCTCAACGGAAGCCTCAGAACAACCCCAGTTCAACTTCACTTGATCAGAAACCCGTCTCCATCACAATCAAGATCTCCCTTTCCATCCTTGTCTCTTAATGCTTCCAAGGCCCCGTCCCCACAAACCCAGGTCACCGGTCCGCCTCTGGTGGTTGTGGGATCAGCCAATGCCGACATCTATGTGGAGATTGATAGGCTTCCAAAGGAGGGCGAGACAGTCTCAGCCAAGCATGGCCAGACTCTGGCCGGTGGGAAAGGGGCTAACCAGGCTGCTTGTGGTGGGAAGCTATCATACCCCACATACTTTGTGGGGCAGGTGGGTGAGGATGCTCATGGGAAGTTGATTTCTGAGGCACTTAAGGATGGTGGGGTTTGTCTCGATCATCTCAGCACTGTATCTGCTGCGCCCACTGGCCATGCTGTGGTGATGCTTCAGTCCGATGGCCAGAACTCCATTATCATTGTTGGGGGTGCCAATATGTCTTTTTGGCCTGACACTCTCTCTGATGAGGATTTGAAGATTGTGAGGAATGCCGGGATTGTATTGCTTCAGAGGGAAATTCCTGATTTCGTCAACATTCAGGTTGCAAAGGCTGCAAGGGATGCTGGTGTTCCAGTCATTTTGGATGCAGGAGGGATGGATGCACCAATCCCAGTAGAATTACTGAATGTTGTTGATATTCTAAGCCCAAATGAAAGTGAACTTGCACGACTAACCAGAATGCCAACTGAAAGTTTTGAACAGATTAGCCAAGCTGTGGCAAAATGTCATGAAATGGGTGTTAAAGAAGTCCTGGTGAAACTGGGGGAGAAGGGGTCAGCTTTGTTTGTAAAAGGGGAAGAACCAATTAGACAACCAATCATATATGCTGCAAAAGTTCTCGATACCACCGGAGCAGGCGATACCTTTACTGCTGCATTTGCTGTGGCTTTTGTGGAGGGCAGGTCTAAAAAGGAATGCTTGAGGTTTGCTGCTGCTGCAGCTTCTCTCTGTGTTCAAGTGAAGGGGGCCATTCCAAGCATGCCTGACAGACGGTCAGTTTTGGATCTTCTACAGACCTGTTGA 1116 0.4928 MALSSSKHWPFSPTQDSLNGSLRTTPVQLHLIRNPSPSQSRSPFPSLSLNASKAPSPQTQVTGPPLVVVGSANADIYVEIDRLPKEGETVSAKHGQTLAGGKGANQAACGGKLSYPTYFVGQVGEDAHGKLISEALKDGGVCLDHLSTVSAAPTGHAVVMLQSDGQNSIIIVGGANMSFWPDTLSDEDLKIVRNAGIVLLQREIPDFVNIQVAKAARDAGVPVILDAGGMDAPIPVELLNVVDILSPNESELARLTRMPTESFEQISQAVAKCHEMGVKEVLVKLGEKGSALFVKGEEPIRQPIIYAAKVLDTTGAGDTFTAAFAVAFVEGRSKKECLRFAAAAASLCVQVKGAIPSMPDRRSVLDLLQTC* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0015 371 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 312 325 IPR002173 GO:0016301
Vvi19g0015 371 SUPERFAMILY Ribokinase-like 65 368 IPR029056 -
Vvi19g0015 371 Hamap Ribokinase [rbsK]. 64 366 IPR011877 GO:0004747|GO:0006014
Vvi19g0015 371 MobiDBLite consensus disorder prediction 1 65 - -
Vvi19g0015 371 CDD ribokinase 65 360 IPR011877 GO:0004747|GO:0006014
Vvi19g0015 371 Gene3D - 63 370 IPR029056 -
Vvi19g0015 371 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 100 124 IPR002173 GO:0016301
Vvi19g0015 371 PRINTS Ribokinase signature 95 114 IPR002139 GO:0016301
Vvi19g0015 371 PRINTS Ribokinase signature 237 252 IPR002139 GO:0016301
Vvi19g0015 371 PRINTS Ribokinase signature 281 292 IPR002139 GO:0016301
Vvi19g0015 371 PRINTS Ribokinase signature 68 89 IPR002139 GO:0016301
Vvi19g0015 371 PRINTS Ribokinase signature 167 180 IPR002139 GO:0016301
Vvi19g0015 371 PANTHER SUGAR KINASE 66 369 - -
Vvi19g0015 371 Pfam pfkB family carbohydrate kinase 66 360 IPR011611 -
Vvi19g0015 371 FunFam Ribokinase 62 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0015 Vvi-Chr19 157208 162887 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0015 K00852 - vvi:100265800 701.049