Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0006 ATGTTTCTGAGATTTGTTTTTCCACCACCTCCTTCTCTACTGGTGACAGCAATGTCAGTGGTGAGTTTTGCATCAATGGCAAATGCAGGGCTATCAGAGTTGAAAGGAAAACACATGGAATACTCCAAGTTCTGGGAGCTCAAGTCTGGGAGAAAGTACAAAGTGGATAGTAGAACAGGCATGATCGTGTGTTATACTCCAGCATTTCTTGCTGGTGTGGCCTCTTTTGCCCTTTTCCCAGATGAGAGTTTCAGGTTTTTGCTGCTCACTTCGGCTCTCTCCATCCACTTCTTCAAGAGGATATTTGAGGTGCTATTTGTTCACAAATACAGTGGTGGGATGGCTCTCGATGCTGCCATTGTTATCTCTCTTAGCTACTTCATCTCTACTGCAACTATGATCTATGCCCAACACCTCTCTCGAGATTTTCCGGAGCCGCTAATGGATCTCAAGTATCCAGGAATGGCGTTGTTTTTGGTGGGAATACTTGGTAACTTGTACCACCATTGCCAACTTTCCAAGCTGAGGAGCAAGGGTGAGAGAGAGTATAAGATTCCCAAGGGTGGTCTCTTCAACCTGGTAGTATGCCCACACTACCTTTTCGAAATATTAGGTTTTATTGGCTTCTCCTTCATTTCCCAAACGGTGTATGCATTCGCTCTTGCAACAGGCACAGCCTTGTATTTGATGGGAAGAAGTTATTCTACTAGGAGATGGTATGTTTCCAAGTTTGAAAACTTTCCCAATAATGTCAAGGCGCTTATTCCATACATTCTCTAA 780 0.4385 MFLRFVFPPPPSLLVTAMSVVSFASMANAGLSELKGKHMEYSKFWELKSGRKYKVDSRTGMIVCYTPAFLAGVASFALFPDESFRFLLLTSALSIHFFKRIFEVLFVHKYSGGMALDAAIVISLSYFISTATMIYAQHLSRDFPEPLMDLKYPGMALFLVGILGNLYHHCQLSKLRSKGEREYKIPKGGLFNLVVCPHYLFEILGFIGFSFISQTVYAFALATGTALYLMGRSYSTRRWYVSKFENFPNNVKALIPYIL* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0006 259 PANTHER 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE 13 258 IPR039357 -
Vvi19g0006 259 Pfam 3-oxo-5-alpha-steroid 4-dehydrogenase 146 259 IPR001104 GO:0006629|GO:0016627
Vvi19g0006 259 Gene3D - 41 258 - -
Vvi19g0006 259 FunFam 3-oxo-5-alpha-steroid 4-dehydrogenase family protein 86 258 - -
Vvi19g0006 259 ProSiteProfiles Steroid 5-alpha reductase C-terminal domain profile. 154 234 IPR001104 GO:0006629|GO:0016627
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0006 Vvi-Chr19 74079 75059 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0006 96 227 Acyl Lipid Metabolism Gene Families AT3G55360 33.582 6.76e-16 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0006 - - vvi:100252124 521.546