Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0005 ATGGTGTATTGTCAGCGTCGCATTGGTCGTTGCAGGGTGTTTTCTACTAGGGCCCCTGAGACTTTGCTCAATGGTGTTGGTCAAGGTCCTCCACCAGCTTTGGATGTGAAGAAAGAGTCAAGCAGCTCAATATCCCTGGCAAGTTTTTTTGAAGTGGTTGCTGATGACCTCCAAATATTAAACCAAAATCTCCAGTCAATTGTTGGCGCAGAAAACCCAGTTTTAATGTCTGCAGCTGAGCAGATCTTTGGTGCTGGTGGGAAGAGGATGAGACCAGCTTTGGTATTCTTAGTATCTAGAGCCACTGCAGAAATAGCGGGGTTGAAGGATCTGACCATAAAACATCGACGTTTAGCGGAGATCATTGAGATGATCCATACTGCAAGCTTGATACATGATGATGTTTTAGATGAGAGTGATATGCGAAGAGGAAAGGAAACAGTTCATCAACTCTATGGCACACGAGTGGCAGTATTGGCTGGGGACTTCATGTTTGCACAGTCATCATGGTATCTTGCGAATCTGGAAAACCTTGAAGTCATAAAGCTCATCAGTCAGGTTATTAAAGATTTTGCAAGTGGTGAAATAAAGCAGGCATCTAGTTTGTTTGACTGTGAACTTGAACTTGAGGAGTACTTGCTCAAGAGCTTCTATAAGACAGCATCCTTAATTGCCGCGAGTACCAAAGGAGCTGCAATTTTTAGTGGGGTTGACAGCAACATTGCCGAGCAAATGTATGAATATGGTAGGAATCTTGGTCTATCCTTCCAAATTGTTGATGACATATTGGATTTCACACAATCTGCAGAGCAGCTGGGAAAACCGGCTGGCAGTGACCTGGCAAAAGGTAACTTGACTGCCCCAGTAATTTTTGCTCTAGAGAAGGAGCCAAAACTGAGAGAAATAGTTGAATCTGAATTCTGTGAGGCCGGTTCCCTCAATGAAGCCATCAAATTGGTGAAGAGTTGTGGTGGCATTGAGAAAGCACAAGACTTGGCAAAACAGAAAGCTGATCTTGCCATCCAGAATCTACAATGCCTTCCTCAGAGTGCCTTTCGGTTAGCACTCGAGAAAATGGTAAAATACAATCTTGAGCGGATTGATTAG 1107 0.4372 MVYCQRRIGRCRVFSTRAPETLLNGVGQGPPPALDVKKESSSSISLASFFEVVADDLQILNQNLQSIVGAENPVLMSAAEQIFGAGGKRMRPALVFLVSRATAEIAGLKDLTIKHRRLAEIIEMIHTASLIHDDVLDESDMRRGKETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASSLFDCELELEEYLLKSFYKTASLIAASTKGAAIFSGVDSNIAEQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFALEKEPKLREIVESEFCEAGSLNEAIKLVKSCGGIEKAQDLAKQKADLAIQNLQCLPQSAFRLALEKMVKYNLERID* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0005 368 NCBIfam solanesyl diphosphate synthase 44 367 - -
Vvi19g0005 368 SUPERFAMILY Terpenoid synthases 46 366 IPR008949 -
Vvi19g0005 368 PANTHER GERANYLGERANYL PYROPHOSPHATE SYNTHASE 37 366 - -
Vvi19g0005 368 SFLD Isoprenoid Synthase Type I 79 366 - -
Vvi19g0005 368 FunFam Solanesyl-diphosphate synthase 2, chloroplastic 45 367 - -
Vvi19g0005 368 Pfam Polyprenyl synthetase 74 319 IPR000092 GO:0008299
Vvi19g0005 368 CDD Trans_IPPS_HT 70 366 IPR000092 GO:0008299
Vvi19g0005 368 ProSitePatterns Polyprenyl synthases signature 2. 252 264 IPR033749 -
Vvi19g0005 368 ProSitePatterns Polyprenyl synthases signature 1. 130 144 IPR033749 -
Vvi19g0005 368 Gene3D Farnesyl Diphosphate Synthase 44 367 IPR008949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0005 Vvi-Chr19 48560 58236 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0005 K05356 - vvi:100246988 698.353