Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0002 ATGGAAGTATCATCATCATCGTTGTCATCCTCCTCACCCCTATCAGTTCACTGGAGAAGGGATTTCTCCCCACTACTTGGTCGAGTTTCTCTCGACTGCCATGGCAGCCGCAAGCTCCCAAATCGCCCTTTCTCTTCTTCCACTTGTTCTTGCTTTGGAATTTCAATCTCCCAGCGGCCCCATTCCCATTCCTTTGTGTTCAGAAAATCCTCTCCACGCATTTCCGCAGTCTTTGAGCGCTTCACTGAACGAGCCATTAAGGCTGTCATCTTTTCCCAAAGAGAAGCGAAAGCTTTGGGCAGGAATATGGTATTCACCCAGCATCTTTTATTGGGTTTGGTCGCTGAGGATCGTAGTCTCGATGGCTTTCTTGGATCTGGCATCACCATAGACGATGCACGCGATGCTGTTCGCAGCATTTGGCATGATTATAACGACAGCAGCATCATTTCTGGAATTCCCAGTTCCCAAACCTCTGTTGCCTCCTCCACTGACGTCCCCTTTTCCATTAGCACAAAGCGAGTGTTTGAAGCCGCAATTGAGTACTCTAGGACTATGGGTTATAATTTCATTGCTCCCGAGCATATCGCTATTGGGTTATTTACAGTTGATGACGGCAGTGCTGGTCGTGTCCTCAAGAGATTGGGGGCAAATGTTAATCACTTGGCAGCTGTGGCAGTCTCCAGGCTTCAAGGAGAGCTTGCCAAAGATGGTAGTGAACCATCTGCTACATTCAAAGGGATGCAGGGAAAATCTTTTTCTGGAAAAGCAGCCATTGTGAAATCCTCAGGAAAAAAGAAGGAGAAAAGTGCTCTGGCTCAATTCTGTGTAGACCTTACTGCTCGTGCTACTGATGGACTCATTGATCCTGTAATTGGCCGAGACATGGAAGTTCAGAGGGTTGTCCAAATACTTTGCCGAAGAACTAAAAATAACCCCATTCTTCTAGGTGAAAGCGGGGTTGGGAAAACAGCTATTGCTGAAGGATTGGCAATTAGTATTGCAGAGGCAGATGTTCCCTCTTTTCTCTTGACAAAACGCATAATGTCCTTGGATATAGGTCTATTAATGGCAGGCACAAAGGAGAGGGGAGAATTAGAGGCACGTGTTACTACTTTAATAAGTGATATTTTGAAATCAGGTAATATCATTCTTTTCATTGATGAAGTCCACATGCTTGTTGGGTCTGGCATTGCTGGACGAGGAAACAAGGGGTCAGGTCTAGACATTGCTAGTCTATTGAAGCCCTCTCTTGGGAGGGGACAGTTACAGTGTTTTGCATCCACTACCATAGATGAGTACGTGAAACTTTTTGAGAAGGATAAAGCATTAGCAAGAAGATTCCAACCTGTGTTGATCAATGAGCCAAGCCAGGAGGAAGCTGTTAGGATACTGTTGGGCCTGCGGGAGAAATATGAGGCCCATCACAAATGCAGATTCACATTGGAGGCCATAAATGCTGCTGTGCACCTATCAGCAAGATATATTCCTGATAGGCGTCTTCCTGATAAAGCAATTGATCTTATTGATGAGGCAGGAAGTAAAGCTCGTATGGAAGCATACAAGAGGAAGAAGGAAAAGCAAACTTCTGTGCTTTTAAAATCACCAGATGATTATTGGCAAGAAATTAGGGCTGTTAAGGCCATGCATGAAATGGTCATGGCTAGTAAACTGAAAAATTGTAATGGTGCTTCTTGCATGGAAGATGGTAGCACTGTCCTTTTTGAATCCCCTTTGCCTTCAATGTCAGATGATAATGAACCTATAGTGGTGGGACCCAATGAAATAGCAGTAGTTGCATCACTCTGGTCAGGGATACCAGTTCAGCAGATCACTGCTGATGAAAGAATGCTCCTGGTGGGTCTTCATGAGCAGCTTAGGAAACGGGTGGTTGGTCAAGATAATGCTATTGCTTCCATTTCTCGTGCTGTTAAGAGATCCCGGGTTGGCTTGAAGGACCCCAACAGACCCATTGCAGCAATGCTTTTTTGTGGCCCAACTGGGGTTGGCAAAACTGAATTGGCAAAAGCTTTAGCGGCATGCTATTTTGGATCAGAGGCAGCAATGGTAAGATTGGACATGAGTGAATATATGGAGCAGCATAGTGTGAGTAAGTTGATAGGATCTCCCCCAGGTTATGTAGGCTATGGAGAGGGAGGCACTCTTACAGAAGCTATCAGAAGGCAACCTTTTACAGTTGTATTGCTTGATGAAATAGAGAAAGCCCATCCCGATATATTCAATATTCTCCTCCAAATGTTTGAAGATGGTCACTTAACAGATTCTCAGGGTCGGAGGGTGTTGTTTAGGAATGCATTGGTTGTCATGACCTCCAATGTGGGTTCTGCTGCCATTGCAAAGGGTAGACAAAGCTCCATTGGTTTCTCAATTGCAGATGATGAACCAACTTCATATGCTGGGATGAAAGCACTGGTAATGGAAGAACTGAAGGCATATTTTCGTCCTGAGTTACTCAACAGATTAGATGAAATAGTTGTGTTCCATCCCCTGGAAAAGGCTCAGATGCTGGAGATTCTGAATACCATGCTCCAGGAGGTGAAGGAAAGGCTCAGCTCTCTGGGAATTGGTATGGAAGTGTCAGTGTCGGTTATAGACCTCTTGTGCCAACAAGGCTATGACAAAAACTATGGTGCCCGTCCACTCAGGAGGGCTGTTACCTTAATTATAGAAGATCCCTTGAGTGAAGCACTTCTCACGGAAGAATACCAGCCTGGTGACATTGCTGTTGTTGATTTGGATGCTTCAGGAAACCCATTTGTAAGGAAGCAGTCAAATAGGAGAATCCACCTCTCTGATACAGCCTATGACGAAAAATTGTAA 2841 0.4488 MEVSSSSLSSSSPLSVHWRRDFSPLLGRVSLDCHGSRKLPNRPFSSSTCSCFGISISQRPHSHSFVFRKSSPRISAVFERFTERAIKAVIFSQREAKALGRNMVFTQHLLLGLVAEDRSLDGFLGSGITIDDARDAVRSIWHDYNDSSIISGIPSSQTSVASSTDVPFSISTKRVFEAAIEYSRTMGYNFIAPEHIAIGLFTVDDGSAGRVLKRLGANVNHLAAVAVSRLQGELAKDGSEPSATFKGMQGKSFSGKAAIVKSSGKKKEKSALAQFCVDLTARATDGLIDPVIGRDMEVQRVVQILCRRTKNNPILLGESGVGKTAIAEGLAISIAEADVPSFLLTKRIMSLDIGLLMAGTKERGELEARVTTLISDILKSGNIILFIDEVHMLVGSGIAGRGNKGSGLDIASLLKPSLGRGQLQCFASTTIDEYVKLFEKDKALARRFQPVLINEPSQEEAVRILLGLREKYEAHHKCRFTLEAINAAVHLSARYIPDRRLPDKAIDLIDEAGSKARMEAYKRKKEKQTSVLLKSPDDYWQEIRAVKAMHEMVMASKLKNCNGASCMEDGSTVLFESPLPSMSDDNEPIVVGPNEIAVVASLWSGIPVQQITADERMLLVGLHEQLRKRVVGQDNAIASISRAVKRSRVGLKDPNRPIAAMLFCGPTGVGKTELAKALAACYFGSEAAMVRLDMSEYMEQHSVSKLIGSPPGYVGYGEGGTLTEAIRRQPFTVVLLDEIEKAHPDIFNILLQMFEDGHLTDSQGRRVLFRNALVVMTSNVGSAAIAKGRQSSIGFSIADDEPTSYAGMKALVMEELKAYFRPELLNRLDEIVVFHPLEKAQMLEILNTMLQEVKERLSSLGIGMEVSVSVIDLLCQQGYDKNYGARPLRRAVTLIIEDPLSEALLTEEYQPGDIAVVDLDASGNPFVRKQSNRRIHLSDTAYDEKL* 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0002 946 Pfam ATPase family associated with various cellular activities (AAA) 314 415 IPR003959 GO:0005524|GO:0016887
Vvi19g0002 946 Gene3D - 258 457 IPR027417 -
Vvi19g0002 946 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 735 753 IPR001270 GO:0005524
Vvi19g0002 946 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 661 679 IPR001270 GO:0005524
Vvi19g0002 946 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 706 724 IPR001270 GO:0005524
Vvi19g0002 946 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 768 782 IPR001270 GO:0005524
Vvi19g0002 946 ProSitePatterns Chaperonins clpA/B signature 1. 409 421 IPR018368 GO:0005524
Vvi19g0002 946 Gene3D - 73 231 IPR036628 -
Vvi19g0002 946 Pfam AAA domain (Cdc48 subfamily) 656 831 IPR003959 GO:0005524|GO:0016887
Vvi19g0002 946 Pfam Clp amino terminal domain, pathogenicity island component 93 140 IPR004176 -
Vvi19g0002 946 Pfam Clp amino terminal domain, pathogenicity island component 180 223 IPR004176 -
Vvi19g0002 946 ProSiteProfiles Clp repeat (R) domain profile. 78 233 IPR004176 -
Vvi19g0002 946 SMART ClpB_D2_small_2 837 927 IPR019489 -
Vvi19g0002 946 Pfam AAA lid domain 457 553 IPR041546 -
Vvi19g0002 946 SUPERFAMILY Double Clp-N motif 79 233 IPR036628 -
Vvi19g0002 946 SMART AAA_5 309 458 IPR003593 GO:0016887
Vvi19g0002 946 SMART AAA_5 657 799 IPR003593 GO:0016887
Vvi19g0002 946 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 606 920 IPR027417 -
Vvi19g0002 946 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 271 528 IPR027417 -
Vvi19g0002 946 PANTHER ATP-DEPENDENT CLP PROTEASE 82 925 - -
Vvi19g0002 946 CDD RecA-like_ClpB_Hsp104-like 622 834 - -
Vvi19g0002 946 ProSitePatterns Chaperonins clpA/B signature 2. 691 709 IPR028299 -
Vvi19g0002 946 Gene3D - 837 938 - -
Vvi19g0002 946 Gene3D - 459 564 IPR027417 -
Vvi19g0002 946 Gene3D - 588 836 IPR027417 -
Vvi19g0002 946 FunFam ATP-dependent Clp protease subunit 610 835 - -
Vvi19g0002 946 CDD AAA 292 449 - -
Vvi19g0002 946 Pfam C-terminal, D2-small domain, of ClpB protein 837 916 IPR019489 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0002 Vvi-Chr19 20819 28226 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0002 - - vvi:100248728 1823.91