Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0001 ATGAAGCTTTTGGATTCAACAATTAGGCGGGCAGAACGAGAAGGTGGAGGGGGAGGGCAGAAGCATTGGCCTCGCAAGAGGGTAGCAAGAGAAATTGTGAAAGCGGCATTTATTTATTTTGATTCATTCCATACCCCTTTTATTTCAACCGCCACTGGCTGTTGTTGCAAAATAATTCATCTTGTGCCGGATCGGCCATGCACCATTGGCAGGAGCCACCAGTCTTGTGACTACGTGCTTGAGGACCGTCGAGTTAGTAAGCAGCACTGTCAGATACTCTTTGATGGCTTTCACCGCAAGATTTTCATATTGGACGGAGGAAGATTTAGGACAAAAGGAGATCTTGATAAACTGGAAGAGACAGCGGTTAGGCCTTCTCTGAATGGGATTTTTCTCAATGGGTTTAAGATAGGAAAGGACACCCTCAAAGAGTTGTCTGCTGGAGACGAGGTTTCATTTGTTTGTCAAAATGAACGTCTTGCTGGGTTTCTTATCCAAAGGATTGTTTTTACAGAGGAGGCTCTGGAGGGGAGAGGGGAAGCAGCATCCTCGGGCCCAATTAATCCTTCTCCTACATCTGAAAGTGATGACCTTATAACTAGGAGAGCAAACTTCTATTTAGGTCAGTGCAGATGCATATTGAATAGTGATGACCCAATCTCTTATATTCGAGGATTTGTTACTTCATATAGTGAAATTCAAGGCCTATGTTCTTGCAGCAGCAGACTGAACAATTTTCCGAGCTTTCTATTAAGCACTGATGCTAAATTGTCTCCCGTTCTCAAGGGAATCCCATGGCCCAGCCAGGGCTTGCAAAATGTTGAGAGTTCTGAAAATATAAGGGCCAACAGGCTACAATTGAATTCTATTTTCCTTAACAGGCAATCAGTACTAGTTTCTGAGTTAAACCCTTCTCCAACATGTGTTCCGGTTCCTCGTTATCAATTATATCAACTTGATCATGCTGGATTTCCTCATGCTGATGTGATTGCCAGTGCTAAACCTAAGACTCTGTCCTCGAATTCTATGGGCAAGGAGAATGATCAACAATTTCATGGTGTTATGCATAATAAAACTTGGGGCACATCTTGTCCCCCACCTGGAAAGAAGTTTTATCTAAATCGCCTTGAATTCATGAATTATAGTTCATCTGGTAATCATACTGTCATTTCTTTGCCAGAGCTTCTTTTTCCTGTTGAAAACCTTTCACGGATATTTGTTGCGACATTTACAAGCGATGTTTTATGGTTTTTATCATATTGCAAGGTTCCTGGACATCTGCCTGTCACAATTGCATGTCATCACACTGAAAGATGTTGGAGTTCAAGTGCTGACAAAAGGGCATATGTGCCTTACTCTGATTATCCAAACTTGGTCATTGTGCATCCTCCTTTTCCTGAGGCCATTGCCTTTGGTAGAGACCGCAAGAAATTAGGTGTTGCTTGCCATCACCCAAAGTTGCTTGTTTTGCAAAGAGAAGATAGTATTCGTATCATCATTACTTCTGCAAACTTAGTGGCAAAACAGTGGAACAGTGTGACCAATACCGTTTGGTGGCAAGATTTCCCCCGGATAAGTCCGCCTGATTATTCCTCTATTTTTACTCAATTTTGTGATGGAGAAATAAATCTAGATTCAAGATCAGATTTTGCTGCTCAGCTGGCTGGATTTATGGCATCTCTTGTGATTGATGTGCCCAGTCAGGCCCATTGGATTATGGAGTTGACTAAGTATGATTTTAAAGGGGCTACTGGACACCTGGTTGCTTCAGTACCTGGAATTCATTTCCATAGAACTCCCCATGCATCAAAATCTATGCAATTCTTACATGCTAATCAGAATGCATCATGTTCATTTGGTATGAAGTTCTTAGGTTCAATTGAAGCATCTATAGTTGGTTTAAGCCACCTTTTTCACACTGCAGCAGATGCAAATGGTGCACATCTCAAGAAATTGGCTGCTTTCCTTGGGAAGTGCCACAAAAATGAATATGGAATGTCAGAGATTGTTTTAAGAAGAAATAGTAACATACCTGCAGATTCAAATGCTGTAAGCATTCTTGTTCCTGAACCAGTTGAGCATTCTGAAGGAGATTGCATTCAACTTGGGTTTTTGCCTAGAGATGTTGCGAAGTGGGTTTCTCCTTTATGGGATAGTGGCTTCTTCAGATTCTCTGGATATGTTTGTCCTATGGAAGCTCTTGCAGTTGCCTTAGGGGGTAAAACCCACAAAGTACAATTGATACTGTATGTATCACAGGGAGCTAGCTTTTCATATATATTAAAGATGATGCAACCAGAACATCTTTCTGCAATCTGCTCTCTTGTTGCATCACTAAAGAGGTGTGTAGGCCTCTGGCGACTACAAGAGATTTTAGGTGGATACCAATGGCCTGAATCACAAGAAACTGATTTCATTTATGGTTCATCCTCAATTGGATCATCAATCAATGCACAATTTCTAGCTGCATTTTCTGCAGCTGCTGGAAAGAGGTCATTGCAATTCTTTGAATCTGACGAGTCTGATCCAGAGTGGGGTTGCTGGAGTGCTAGTCAAGAATCAAGAAGTCCATCCATTAAAATTGTTTTCCCCACTATTGAAAGAGTAAAAAATTCAAGTTGTGGAATCTTGCCTTCAAGACGCATACTTTGCTTCTCAGAGAAAACATGGCAACGGTTGAAGAATGTAAGCACAATTCATGATGCAATTCCTCATCCCAGTGATAGAGTGAAGCATCCAATGCATGTCAAGGTGGCACAAAGACGCTTTCAGTCAAAAATGGATTCATCTTCCTTTGGGTGGGTCTATTGTGGGTCACATAACTTCAGTGCAGCTGCTTGGGGACGTCCAATTTCCAATCCTTTTGGAATAAAAACAACTGGAACTCACAAAGCTGACTCTTGCTTCGATCAGAGGCTTCACATTTGTAACTATGAACTTGGGATCATTTTCATTTTCCCCCCATCAGCTACAAAAGGTAACGGCAACCAAAGTAGTACAAACTTGGATGATGTAGTTTTGCCGTTTGTCATGCCTGCCCCAAAATATGGCCCCAGAGATAGACCTGCAACAACTCAAGCCATGACAGAGGCATTAGCTGAACTTACTGAGCAAGAGCATGAAAAACTTGTAGCAGCAACAAATACTGAAGAAATGATAGAAGAGGAGCTCCCAGATGAGGAAGAGGCGGTAGAGGTAACTGACCATGTTGCAGAGGAGAAGGAAGAAGAGAAGGCTTATGCTGAGCTGCTGTGGAGTCAGGTTGATTCATCTCAAAGCTGTTGA 3285 0.4201 MKLLDSTIRRAEREGGGGGQKHWPRKRVAREIVKAAFIYFDSFHTPFISTATGCCCKIIHLVPDRPCTIGRSHQSCDYVLEDRRVSKQHCQILFDGFHRKIFILDGGRFRTKGDLDKLEETAVRPSLNGIFLNGFKIGKDTLKELSAGDEVSFVCQNERLAGFLIQRIVFTEEALEGRGEAASSGPINPSPTSESDDLITRRANFYLGQCRCILNSDDPISYIRGFVTSYSEIQGLCSCSSRLNNFPSFLLSTDAKLSPVLKGIPWPSQGLQNVESSENIRANRLQLNSIFLNRQSVLVSELNPSPTCVPVPRYQLYQLDHAGFPHADVIASAKPKTLSSNSMGKENDQQFHGVMHNKTWGTSCPPPGKKFYLNRLEFMNYSSSGNHTVISLPELLFPVENLSRIFVATFTSDVLWFLSYCKVPGHLPVTIACHHTERCWSSSADKRAYVPYSDYPNLVIVHPPFPEAIAFGRDRKKLGVACHHPKLLVLQREDSIRIIITSANLVAKQWNSVTNTVWWQDFPRISPPDYSSIFTQFCDGEINLDSRSDFAAQLAGFMASLVIDVPSQAHWIMELTKYDFKGATGHLVASVPGIHFHRTPHASKSMQFLHANQNASCSFGMKFLGSIEASIVGLSHLFHTAADANGAHLKKLAAFLGKCHKNEYGMSEIVLRRNSNIPADSNAVSILVPEPVEHSEGDCIQLGFLPRDVAKWVSPLWDSGFFRFSGYVCPMEALAVALGGKTHKVQLILYVSQGASFSYILKMMQPEHLSAICSLVASLKRCVGLWRLQEILGGYQWPESQETDFIYGSSSIGSSINAQFLAAFSAAAGKRSLQFFESDESDPEWGCWSASQESRSPSIKIVFPTIERVKNSSCGILPSRRILCFSEKTWQRLKNVSTIHDAIPHPSDRVKHPMHVKVAQRRFQSKMDSSSFGWVYCGSHNFSAAAWGRPISNPFGIKTTGTHKADSCFDQRLHICNYELGIIFIFPPSATKGNGNQSSTNLDDVVLPFVMPAPKYGPRDRPATTQAMTEALAELTEQEHEKLVAATNTEEMIEEELPDEEEAVEVTDHVAEEKEEEKAYAELLWSQVDSSQSC* 1095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0001 1094 Gene3D Endonuclease Chain A 772 1028 - -
Vvi19g0001 1094 SUPERFAMILY Phospholipase D/nuclease 774 1035 - -
Vvi19g0001 1094 SUPERFAMILY Phospholipase D/nuclease 366 582 - -
Vvi19g0001 1094 CDD PLDc_Tdp1_2 785 984 - -
Vvi19g0001 1094 Gene3D Endonuclease Chain A 365 582 - -
Vvi19g0001 1094 ProSiteProfiles Forkhead-associated (FHA) domain profile. 67 137 IPR000253 GO:0005515
Vvi19g0001 1094 CDD FHA 59 153 - -
Vvi19g0001 1094 Pfam Tyrosyl-DNA phosphodiesterase 371 598 IPR010347 GO:0005634|GO:0006281|GO:0008081
Vvi19g0001 1094 Pfam Tyrosyl-DNA phosphodiesterase 782 1017 IPR010347 GO:0005634|GO:0006281|GO:0008081
Vvi19g0001 1094 SMART FHA_2 66 137 IPR000253 GO:0005515
Vvi19g0001 1094 Gene3D - 620 757 - -
Vvi19g0001 1094 Pfam FHA domain 67 153 IPR000253 GO:0005515
Vvi19g0001 1094 Pfam HIRAN domain 624 751 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vvi19g0001 1094 PANTHER TYROSYL-DNA PHOSPHODIESTERASE 1 52 1085 IPR010347 GO:0005634|GO:0006281|GO:0008081
Vvi19g0001 1094 SUPERFAMILY SMAD/FHA domain 13 168 IPR008984 GO:0005515
Vvi19g0001 1094 CDD PLDc_Tdp1_1 390 557 - -
Vvi19g0001 1094 Gene3D - 49 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0001 Vvi-Chr19 2635 19300 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0001 - - vvi:100243589 2192.16