Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2105 ATGACTCAAAATTATGGGATAGAACCTCAGATTGAGCATTATGGTTGCTTGGTAGATCTTCTTGGTCGTGCAGGTCAGTTTGAAGAAGCTATGGAGGTTGTAAGGGGAATGAGAATTGAACCTGATGAGGTTATTTGGGGCTCTTTGCTTAATGGATGTAAGATTCATGGCCACACAGATTTGGCTGAATTTTCCATTAAAAAATTGATTGATATGGATCCAAATAATGGTGGTTATGGTATAATGTTGGCAAATATATATGGGGAGCTAGGCAAGTGGGATGAGGTTCGGAAGGTTCGGAAGGTGTTGAAGGAGCAGAATGCCCACAAGACCCCTGGTTGCAGTTGGATTGAAATTGACAACCAAGTTCATCAATTCTATTCTGTTGATAAAACACATCCTAGAACGGAGGAGATATACAATACATTGGAGAGTCTGATTAGTCTGTACTAG 453 0.404 MTQNYGIEPQIEHYGCLVDLLGRAGQFEEAMEVVRGMRIEPDEVIWGSLLNGCKIHGHTDLAEFSIKKLIDMDPNNGGYGIMLANIYGELGKWDEVRKVRKVLKEQNAHKTPGCSWIEIDNQVHQFYSVDKTHPRTEEIYNTLESLISLY* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2105 150 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 147 IPR046960 GO:0003723|GO:0009451
Vvi18g2105 150 Pfam PPR repeat 13 38 IPR002885 -
Vvi18g2105 150 Pfam E motif 57 118 IPR046848 -
Vvi18g2105 150 SUPERFAMILY TPR-like 13 97 IPR011990 GO:0005515
Vvi18g2105 150 Gene3D Tetratricopeptide repeat domain 1 146 IPR011990 GO:0005515
Vvi18g2105 150 NCBIfam pentatricopeptide repeat 14 38 IPR002885 -
Vvi18g2105 150 FunFam Pentatricopeptide repeat-containing protein At4g33990 2 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2105 Vvi-Chr18 29173490 29173942 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2105 1 148 Glycoside Hydrolase AT3G49170 39.865 1.16e-42 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2105 - - vvi:100243058 316.235