Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2103 ATGGCTGGTGGAGTATTGAGAGGGAAGAGAGAGGTGGTGGAGCGGTTGTTGATGGTGGGTAGGTGTAACCACCGGTTCATGCAGAAGTCGCCCATCTCGACCCGGTTCGCGAACTGCCTGCATATGGGTTCCCACCGCCGGCGGGAGTCGCTGATCGGAGTTCAGGAGAGGTACAAGTGGGACCACGGCGGCTCCGACGGTTTCCAGACGCGGAAGATTAGGGCAGAAGCCAATTGCCCTAGATGCTCAAAAGTCATGGATCTCCTCTTCTCTAATCGTCACTTTCCATCCAATTTCTCACCTGCCGTTCCCACTGATAGTTCCAATTCCAAGGGAAGTGGCGGGAGTTATCAGGCGGTTAATCTTTGCCCTAATTGCAAAACCGCTTACTATTTCAGGCCCTACAAGATTGCCCCACTTCAGGGGAGTTTCGTGGAGATTGGTAGGTCCGATTACAACAATACAAATACGAATCATCCAAAAGGAAAGGATAACGAGAAGAAGAGCAGCAAAAACGGTGGTGGTCATGAGGAAGACTATGGGAGCAGGCTCAGGATGTCGTTTTGGGAGACTTTGAGGTCCTATGGAGGCGACCCGCCGGAGAATTGGCCACCTCCGCCGCCTCCGCCGTCGGGAAATGGGCTGGCAGTGCATGCACCGCCGGGGCCGCCATTTGCTCCTGGAGTTAATGTGATTCGGGCGGCCGGACCTGGTGTAGGGGGTAATGGTGGTGGTGGTGGAGGAAATGGGTCATTTGGGGAGAGGAATGGGTGGGGTGGGTCGAATTTAGGGAAGGATTTGCCGACGCCGAAGGAGATCTGCAAGGGACTTGACAAGTTTGTCATTGGGCAGGAAAGAGCCAAAAAGGTGCTATCTGTGGCTGTATATAATCACTACAAAAGGATATATCACGGCTCCTTGCAGAAAGGGTCAGGAGCAGAATCAGGTACATCAGAGGTTGATGATGATTCTGTGGAGCTGGAAAAGAGCAATGTTCTCTTGATGGGTCCAACTGGCTCAGGAAAAACATTACTTGCAAAAACACTTGCTCGTTTTGTGAATGTGCCCTTTGTCATTGCTGATGCAACAACCCTTACACAGGCTGGTTATGTTGGAGAAGATGTTGAGTCAATATTATATAAATTGCTTACGGTTGCTGAGTTCAATGTACAAGCAGCTCAACAAGGGATGGTCTATATCGATGAAGTTGACAAGATAACTAAAAAGGCTGAGAGCTTAAACCTTAGCAGAGATGTTTCTGGTGAGGGTGTTCAGCAAGCATTACTGAAAATGCTGGAAGGAACTATAGTGAATGTTCCTGAGAAGGGAGCGAGGAAGCATCCTCGGGGTGATAATATTCAGATAGATACAAAAGATATCCTTTTTATATGTGGTGGAGCATTTGTTGATTTAGAAAAAACCATTTCAGATAGACGGCAAGATTCTTCAATTGGTTTTGGAGCACCTGTTCGTGCTAACATGAGAACTGGTGGGTTAACCAATGCTGTGGTGACATCATCCTTACTAGAATCGGTTGAAAGTAGTGATCTTATTGCATATGGCCTCATACCAGAGTTTATTGGACGCTTTCCTATTCTAGTTAGTTTGTCAGCTCTGACTGAGGATCAACTTGTTAAGGTTCTCACAGAACCAAAAAATGCTCTTGGTAAGCAGTACAAGAAATTGTTTAGCATGAACAATGTAAAGCTACATTTTACAGAGAAAGCACTCAGACAGATCGCAAAGAAGGCAATGGTCAAGAATACGGGTGCTAGGGGTTTAAGAGCCCTACTAGAGAGCATTCTAACTGAAGCCATGTATGAGATTCCTGATGTTAAGACAGGAAAGGATAGAGTAGATGCTGTTGTGGTTGATGAGGAGTCAGTGGGTTCAGTAAATGCCCCTGGATGTGGAGGGAAAATCCTTCGTGGAGACGGTGCATTGGATTGTTACCTTGCTGAAACCAAGTTGAAAGATCCAGTGGAGAGTGGTGGCGAGGCAGGGGATGGGGAATTGCAGGAAGCCGAGTCGGAGGTCTCATCAAGAGCCATGAGCATGTAA 2061 0.4765 MAGGVLRGKREVVERLLMVGRCNHRFMQKSPISTRFANCLHMGSHRRRESLIGVQERYKWDHGGSDGFQTRKIRAEANCPRCSKVMDLLFSNRHFPSNFSPAVPTDSSNSKGSGGSYQAVNLCPNCKTAYYFRPYKIAPLQGSFVEIGRSDYNNTNTNHPKGKDNEKKSSKNGGGHEEDYGSRLRMSFWETLRSYGGDPPENWPPPPPPPSGNGLAVHAPPGPPFAPGVNVIRAAGPGVGGNGGGGGGNGSFGERNGWGGSNLGKDLPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYKRIYHGSLQKGSGAESGTSEVDDDSVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLTVAEFNVQAAQQGMVYIDEVDKITKKAESLNLSRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDLEKTISDRRQDSSIGFGAPVRANMRTGGLTNAVVTSSLLESVESSDLIAYGLIPEFIGRFPILVSLSALTEDQLVKVLTEPKNALGKQYKKLFSMNNVKLHFTEKALRQIAKKAMVKNTGARGLRALLESILTEAMYEIPDVKTGKDRVDAVVVDEESVGSVNAPGCGGKILRGDGALDCYLAETKLKDPVESGGEAGDGELQEAESEVSSRAMSM* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2103 686 MobiDBLite consensus disorder prediction 660 686 - -
Vvi18g2103 686 MobiDBLite consensus disorder prediction 195 222 - -
Vvi18g2103 686 Gene3D - 538 638 - -
Vvi18g2103 686 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 266 625 IPR027417 -
Vvi18g2103 686 Pfam C-terminal, D2-small domain, of ClpB protein 539 609 IPR019489 -
Vvi18g2103 686 SMART AAA_5 328 490 IPR003593 GO:0016887
Vvi18g2103 686 MobiDBLite consensus disorder prediction 151 183 - -
Vvi18g2103 686 MobiDBLite consensus disorder prediction 160 183 - -
Vvi18g2103 686 Gene3D - 261 537 IPR027417 -
Vvi18g2103 686 MobiDBLite consensus disorder prediction 199 222 - -
Vvi18g2103 686 Pfam AAA domain (Cdc48 subfamily) 328 532 IPR003959 GO:0005524|GO:0016887
Vvi18g2103 686 NCBIfam ATP-dependent protease ATP-binding subunit ClpX 265 630 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Vvi18g2103 686 FunFam CLP protease regulatory subunit CLPX3 mitochondrial 261 537 - -
Vvi18g2103 686 FunFam ATP-dependent Clp protease ATP-binding subunit ClpX 538 641 - -
Vvi18g2103 686 CDD RecA-like_ClpX 268 536 - -
Vvi18g2103 686 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 74 656 - -
Vvi18g2103 686 SMART ClpB_D2_small_2 539 632 IPR019489 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2103 Vvi-Chr18 29118612 29130013 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2103 K03544 - vvi:100249902 1303.89