Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2099 ATGGTGAAGTCCCTAGGGAACCTGCATTTTCTGTTCATACTAACCTTCATAGCCTTTGTTGTTGCTTGTTTTTGTGAACCCACTGACCTCATTTCTTCTTGCTTAACTCGGCACAATGTTAATAACTTCACGGTATTGCCTCACAAGCAAAATGAGTCCCCAGCTTACTATAGGCTCCTCAACTTCTCCATTCAGAATCTGCGGTATGCTGTCCCTACTGCCCCAAAACCAGTTGCCATTGTTCTACCACAGAGTCGAGAGCAGCTAGTGAACACCGTGTCATGCTGTAGGGAAGGATTGTTTGAAATTAGAGTAAGGTGTGGTGGACACAGCTATGAAGGAACTTCCTCGGTTGTTTTGGATGGAAATCCATTCGTGATCATTGATATGATGAGTCTAAACCAGGTTCTGGTGGATTTGGAGTCTGAAACTGCATGGGTTGAAGGGGGTGCAACACTTGGTGAGACTTACTATGCTGTTGCAGAAGCGAGCAATGTACATGGGTTCTCAGCCGGGTCATGCCCAACTGTAGGTGTTGGTGGCCACATTTCTGGCGGTGGATTTGGGTTGTTGTCCAGAAAATATGGTCTTGCAGCTGACAATGTGGTGGATGCGCTTCTCATTGATGCAGATGGACGCCTAGTAGACCGGGAAGCCATGGGAGAAGATGTGTTCTGGGCAATTAGAGGTGGTGGCGGCGGTGTTTGGGGGATTGTATATGCATGGAGGATCAAGTTGTTGAAAGTACCTGAAATTGTAACATCCTGTATAATGTCGAGAACTGGGACCAAGCTCCATGTAGCTGAGCTAGTCCACAAGTGGCAATTCATCGCACCCAGGTTAGAACCTTCATTTTATCTATCAGTTTTTGTTGGTGCTGGTTTACTGGGAGGGAAGGAAACTGGGGTTTCAGCTTCATTCAAAGGGTTCTATCTGGGTTCAAGAAGCAAGGCCATGTCGATCCTGAACCAGGTTTTCCCAGAGCTAGGCATTGAGATAGAAGAATGCAGAGAAATGAGCTGGATTGAATCCATCGCATACTTCGGTGACTTGGCCGAAGGAAGCTCCATCTCTGAGCTGAGGAACCGATACCTGCAAGCCAAACTATACTTCAAGGCCAAATCAGACTATGTGAGGACTCCCATTTCCATGAAAGGCCTGAGGACTGCCTTGGACACTCTTGAGAAGGAGCCAAAAGGTTACGTTATCTTGGACCCTTATGGAGGAGAAATGGAGAGAATAGGCAGTGATGCCATAGCTTTTCCTCACAGAAAAGGCAACCTGTTCGCAATTCAGTATATGGTGGCCTGGGAAGAAGACTCTCTTATGAGCTACAAGTACATAGATTGGATAAGAGGATTCTACAAGTCGATGACGCCGCATGTTTCATGGGGTCCAAGGGCTGCTTATGTTAATTACATGGACCTGGATCTTGGAGTGATGGAAATGGTGAATAGCAGCTTTTCATCTGGTGATCCTGTGGAGATTGCCAGGGCTTGGGGTGAGAAGTATTTCTTGAACAACTACGAGAGTGTTTTCGATAATTTAATGCTATACATAGGCTGGCCATGTGCATTCATCTCTCCATGCTTTTGTCCTCAACTCCTGATACTATATGTTATCAACCTCGGTGTTAAAAGCCACCTACTCTCTATAGTCTCCACCTCCATCTCAATTCGAAGAAGCATAGCCATGGTGAAGTACCTAGGGAACCCGCATTCCCTTTTCATAATAACCTTCATAGCTTTTGTTGTCCCTTGCTTTTGTGATCCCACTGACATCATTTCGTCTTGCTTAATCCGGCACAATGTTTATAACTTCACGTTATTGCCTCACAACGGAAGCCAGTCTCCAGATTACTATAGGCTCCTCAACTTTTCCCTTCAGAATCTGCGGTATGCTGTCCCCACTGCTCCAAAACCAGTTGCTATTGCTATACCACAGAGTCTAAAGCAACTAGTGAACAGTATGCGGTGTTGTAGGGAAGGATGGTATGAGTTTAGAGTAAGGTGCGGTGGACACAGCTATGAAGGGATTTCTTCGGTTGTTCCGGATGGAAATCCATTTGTTATCATTGATATGATGAGTCTAAACCAGGTTTCGGTTGATGTAAGGTGCGGTGGACACAGCTATGAAGGGATTTCTTCGGTTGTTCCGGATGGAAATCCATTTGTTATCATTGATATGATGAGTCTAAACCAGGTTTCGGTTGATGTGGAGTCTGAAACAGCATGGGTTGAAGGGGGAGCAACACTTGGTGAGACGTACTATGCAGTTGCAGAGGCGAGCAATGTGCATGGATTCTCAGCCGGGTCATGCCCAACTGTTGGTGTTGGCGGCCACATTGCGGGGGGTGGATTCGGGCTGTTGTCGAGAAAATATGGTCTTGCAGCTGACAATGTGGTGGATGCGCTTCTCATTGATGCAGACGGACGCGTACTAGACCGGAAAGCCATGGGAGAAGATGTGTTCTGGGCGATTCGAGGAGGAGGGGGCGGTGATTGGGGGATTGTCTATGCATGGAAGATCAAGTTGTTGAAAGTACCTGAAACTGTAACATCCTGTATAATGTCGAGAACTAGGACCAAGCTCCATGTAGCTGAGCTAGTCCACAAGTGGCAATTCATCGCACCCAGGTTAGAACCTTCATTTTATCTCTCAGTTTTTGTTGGTGCTGGTTTACAGGGAGTTGATGAAGAAACTGGGGTATCAGCTTCATTCAAAGGGTTCTATCTGGGTTCAAGGAACGAAGCCATGTCAATCCTGAACCGGGTTTTCCCAGAGCTGGGAGTTGAGAAAGAAGATTGCAGAGAAATGAGTTGGATTGAATCCATCCTCTACTTCAGTGGCTTGCCTAATGGAAGCTCCATCTCTGAGCTGAGAAACCGATACCTGGAAGACAAACTATACTTCAAGGCTAAATCAGACTACGTGAGGACCCCAATTTCCATGGAAGGCCTGGTGACGGCCTTGGACATTCTTGAGATGGAGCCGAAAGGGTCCGTTGTCTTGGACCCATATGGAGGAGAAATGGAGAAGATAAGCAGTGATGCCCTACCTTTTCCTCACAGAAAAGGCAACCTGTTCTCAATTCAGTATATGGTGGCCTGGGAAGAAGACAGCACTGCTATGAGCAACAAGTACATAGATTGGATAAGAGGATTCTACAAGTGGATGATGCCGTATGTTTCACAGGGTCCAAGGGCTGCTTATGTTAACTACATGGACCTTGATTTAGGACAGATGAATAGCAGCATTTCATCTAATGATCCTGTGGAGGCTGCCAGGGATTGGGGTGAGAAGTATTTCTTGAACAACTATGATAGGTTGGTGAAAGTGAAGACATGCATTGATCCGGACAATGTGTTCAATAATCAACAGGGCATTCCTCCAATGCCCACAGCCAGGTTAAATAATAGAAGTGAGGGGCTCGGAGTAAGCGAAAGATGCATGGTTGTAAGTTACTGA 3468 0.4625 MVKSLGNLHFLFILTFIAFVVACFCEPTDLISSCLTRHNVNNFTVLPHKQNESPAYYRLLNFSIQNLRYAVPTAPKPVAIVLPQSREQLVNTVSCCREGLFEIRVRCGGHSYEGTSSVVLDGNPFVIIDMMSLNQVLVDLESETAWVEGGATLGETYYAVAEASNVHGFSAGSCPTVGVGGHISGGGFGLLSRKYGLAADNVVDALLIDADGRLVDREAMGEDVFWAIRGGGGGVWGIVYAWRIKLLKVPEIVTSCIMSRTGTKLHVAELVHKWQFIAPRLEPSFYLSVFVGAGLLGGKETGVSASFKGFYLGSRSKAMSILNQVFPELGIEIEECREMSWIESIAYFGDLAEGSSISELRNRYLQAKLYFKAKSDYVRTPISMKGLRTALDTLEKEPKGYVILDPYGGEMERIGSDAIAFPHRKGNLFAIQYMVAWEEDSLMSYKYIDWIRGFYKSMTPHVSWGPRAAYVNYMDLDLGVMEMVNSSFSSGDPVEIARAWGEKYFLNNYESVFDNLMLYIGWPCAFISPCFCPQLLILYVINLGVKSHLLSIVSTSISIRRSIAMVKYLGNPHSLFIITFIAFVVPCFCDPTDIISSCLIRHNVYNFTLLPHNGSQSPDYYRLLNFSLQNLRYAVPTAPKPVAIAIPQSLKQLVNSMRCCREGWYEFRVRCGGHSYEGISSVVPDGNPFVIIDMMSLNQVSVDVRCGGHSYEGISSVVPDGNPFVIIDMMSLNQVSVDVESETAWVEGGATLGETYYAVAEASNVHGFSAGSCPTVGVGGHIAGGGFGLLSRKYGLAADNVVDALLIDADGRVLDRKAMGEDVFWAIRGGGGGDWGIVYAWKIKLLKVPETVTSCIMSRTRTKLHVAELVHKWQFIAPRLEPSFYLSVFVGAGLQGVDEETGVSASFKGFYLGSRNEAMSILNRVFPELGVEKEDCREMSWIESILYFSGLPNGSSISELRNRYLEDKLYFKAKSDYVRTPISMEGLVTALDILEMEPKGSVVLDPYGGEMEKISSDALPFPHRKGNLFSIQYMVAWEEDSTAMSNKYIDWIRGFYKWMMPYVSQGPRAAYVNYMDLDLGQMNSSISSNDPVEAARDWGEKYFLNNYDRLVKVKTCIDPDNVFNNQQGIPPMPTARLNNRSEGLGVSERCMVVSY* 1156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2099 1155 SUPERFAMILY FAD-binding/transporter-associated domain-like 625 703 IPR036318 GO:0050660
Vvi18g2099 1155 ProSiteProfiles PCMH-type FAD-binding domain profile. 73 249 IPR016166 GO:0071949
Vvi18g2099 1155 SUPERFAMILY FAD-binding/transporter-associated domain-like 702 849 IPR036318 GO:0050660
Vvi18g2099 1155 PANTHER OS08G0158400 PROTEIN 595 704 - -
Vvi18g2099 1155 Pfam Berberine and berberine like 469 510 IPR012951 GO:0016491|GO:0050660
Vvi18g2099 1155 Pfam Berberine and berberine like 1070 1130 IPR012951 GO:0016491|GO:0050660
Vvi18g2099 1155 Gene3D - 736 1131 IPR016169 -
Vvi18g2099 1155 SUPERFAMILY FAD-binding/transporter-associated domain-like 44 250 IPR036318 GO:0050660
Vvi18g2099 1155 Gene3D - 851 1066 - -
Vvi18g2099 1155 ProSiteProfiles PCMH-type FAD-binding domain profile. 637 848 IPR016166 GO:0071949
Vvi18g2099 1155 Gene3D - 252 465 - -
Vvi18g2099 1155 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Vvi18g2099 1155 Gene3D - 698 732 IPR016167 -
Vvi18g2099 1155 Gene3D - 30 133 IPR016167 -
Vvi18g2099 1155 Gene3D - 594 697 IPR016167 -
Vvi18g2099 1155 Pfam FAD binding domain 78 215 IPR006094 GO:0050660
Vvi18g2099 1155 Pfam FAD binding domain 693 814 IPR006094 GO:0050660
Vvi18g2099 1155 Gene3D - 138 510 IPR016169 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2099 Vvi-Chr18 29086420 29097009 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2099 21 514 Miscellaneous Gene Families AT1G30760 40.159 1.05e-110 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2099 - - vvi:100267089 1106.28