Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2082 ATGGATGGCATGGAGAAGACGAGAAGGAAGCTCAAAGGAGAGTCCATGACCATGTCTGTGAAGACTTCTGTTGATTGGAGAGGCAGACCGTGCAAGGCTAACAAGCATGGTGGAATGACCGCTGCTATTTTTGTTCTTGGTCTTCAGGCATTTGAGATGATGGCTATTGCTGCAGTTGGGAACAATCTCATAACATATGTGTTCAATGATATGCACTTCCCTTTGTCAAAGTCAGCAAACATAGTCACAAACTTTATAGGGACTGTGTTTCTCCTCTCCCTCCTTGGTGGGTTCCTCTCAGATTCTTATCTAGGGAGCTTTTGGACCATGTTGATCTTTGGGTTTGTGGAGCTCTCTGGTTTTATACTGTTGTCAGTCCAAGCTCATCTCCCCCAGCTGAGGCCAGCCCACTGCACCATGGTCTTGGATGAAGACAATTGCTCAGAGGCCAAGGGCTACAAGGCTTTGATATTCTTTCTGGCACTCTACTTGGTGGCTTTAGGAAGTGGGTGCCTGAAACCCAACATAATCTCTCATGGGGCGGACCAGTTCAGAAAGGAGGACTCCAAGCAGTCCAAGAAGCTCTCCTCTTACTTCAATGCCGCCTACTTCGCCTTCTGTATGGGGGAGCTTGTTGCACTCACAGTTCTTGTCTGGGTCCAAACGCATTCTGGGATGGATGTCGGTTTCGGAGTCTCAGCTGCAGCCATGGCTATGGGCTTGATCAGCTTGATTTCCGGTACCCTTGTTTATATGAACAAACCCCCCCGTGGAAGTATCTTCACTCCAATTGCTCAAGTTTTTGTAGCTGCAATCACAAAGAGAAAGCAAATCTGTCCTTCAAATTCAGGGATGCTCCATGGAAGCCAGTTGCCAGAACAAGCTTTGGCCTCATCTAATGTCAGAAATCTTCTCCATACTGAAAAGTTCAGGTTTCTTGACAAGGCCTGCATCAAAGTTCAAGATGGAACGCAGACGAGTGAGAGCCCGTGGAGACTATGCACTGTCACACAGGTTGAGCAAGTGAAGATAATCATCTCGGTTGTTCCTATATTCGCCTGCACCATCATCTTCAATACCATCTTAGCTCAGCTCCAAACGTTCTCGGTCCAACAAGGAAGTGCCATGAACACCAGACTCATAAAAGGCTTCCAAATCCCTCCAGCTTCACTTCAATCCATCCCTTACCTCATGCTTATCTTTCTAGTCCCACTGTATGAAACTGTCTTCGTCCCAATTGCCCGAAAAATCACAGGAAGGGACTCTGGAATCTCACCTCTCCAAAGGATTGGCATTGGACTCTTTGTTGCAACTCTGTCCATGGTTTCAGCTGCACTGGTAGAGAAAAAGAGAAGAACTTCTGCTTTGGATTCAAACAGAATCCTCTCCATCTTCTGGATTGCCCCTCAGTTTCTTATCTTTGGCCTCTCTGAGATGTTCACAGCAGTAGGGCTAATAGAGTTCTTCTACAAACAGTCTGTGGAAGGGATGCAGTCATTTCTAACTGCCATGACATACTGCTCGTACTCGTTCGGTTTCTTTTTGAGCTCCCTCCTTGTTTCTCTAGTCAATAGAATCACCTCCAGCCATTCCTCAAGTCGGGGTTGGCTCGGGGATAACGATCTCAACAAAGACCGGTTAGACCTTTTCTACTGGTTGCTAGCTGCTCTAAGTCTCATCAACTTCTTCAACTATCTCTTTTGGTCTAGATGGTATTCTTATAACCCATCTCTATCACCCACTTCCCAACATGTTAGGTTAGCGAAGACAAGTCTCACTGAGTTAATCGTCTTTGCCCTTTCTGTGGTCTCCCTACAACCCTTGCTGCTTCAGTTTCTCATAGAACAGCTTCAGTCTCAGATGGAGGGACAAAAATGGGAGGAGTTAAACATGGATATTTTGGTGAATGTGCTCCGAAGAGTGGGAATGGAGTCGTTGTTGTTGGATGTTCCCTTTGTATGCAAGTCTTGGTATAAAGCGAGCCGCAAACCTCAGTGCTGGGAACATCTTATTTTTCCTAAATTCATCACACCTGATGATATAGGGGAGGAAGACAGCCCGGACAGGGGCTTTGCAGAGAGGTTAGCGATGACATATCAAGAAAACTTGTCTGTCACTGCATCCGTGAAGCTCATACTTAACCGTAGCTGTGGACATGCCACAATCATCAAACTCCCCAATTACTGCACCGAGGAGGCACTGGAGTGTCCCAGATTAAAGGTGTTGGATGTGGGTGATTTTAATATGTCTATCGAAGCTATTATTCCACAATTTATAAGCAAGTGGAAAAGTTTGGAAATGATGAGACTTGGGAAATTTCACATGAAGGAAGTACTACCAGAGATCGGTCTTCACTGCAACAACTTCATTTGGCTATCAGCTCCAGAAACCTACATTGGGAAAGATGAAGCATCGGCCATCGTCACTTCACTGCCACAACTTAAGTACTTGGATCTACATGGGGCATCCTTTGAGAAGGAAACTCTATTGATGATATTGCAGGGCTGCAAACAGCTTGTGCATTTAGACATCAGGGACTGCTGGGGTTTTCATGGTGTTGATGCTGAGATATTGAAACTTGCTTCACATATTCCTACATTCATGTGGGAAGGGTCGATCAGAATACCTGAGATAGAATCCAGTTATGTGCATGACCTCAAGCTTGATCATGAGCTATTCTGCGATCAAATTAATCACAGGACTGCGTTTATGATTTAA 2718 0.4544 MDGMEKTRRKLKGESMTMSVKTSVDWRGRPCKANKHGGMTAAIFVLGLQAFEMMAIAAVGNNLITYVFNDMHFPLSKSANIVTNFIGTVFLLSLLGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPAHCTMVLDEDNCSEAKGYKALIFFLALYLVALGSGCLKPNIISHGADQFRKEDSKQSKKLSSYFNAAYFAFCMGELVALTVLVWVQTHSGMDVGFGVSAAAMAMGLISLISGTLVYMNKPPRGSIFTPIAQVFVAAITKRKQICPSNSGMLHGSQLPEQALASSNVRNLLHTEKFRFLDKACIKVQDGTQTSESPWRLCTVTQVEQVKIIISVVPIFACTIIFNTILAQLQTFSVQQGSAMNTRLIKGFQIPPASLQSIPYLMLIFLVPLYETVFVPIARKITGRDSGISPLQRIGIGLFVATLSMVSAALVEKKRRTSALDSNRILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSVEGMQSFLTAMTYCSYSFGFFLSSLLVSLVNRITSSHSSSRGWLGDNDLNKDRLDLFYWLLAALSLINFFNYLFWSRWYSYNPSLSPTSQHVRLAKTSLTELIVFALSVVSLQPLLLQFLIEQLQSQMEGQKWEELNMDILVNVLRRVGMESLLLDVPFVCKSWYKASRKPQCWEHLIFPKFITPDDIGEEDSPDRGFAERLAMTYQENLSVTASVKLILNRSCGHATIIKLPNYCTEEALECPRLKVLDVGDFNMSIEAIIPQFISKWKSLEMMRLGKFHMKEVLPEIGLHCNNFIWLSAPETYIGKDEASAIVTSLPQLKYLDLHGASFEKETLLMILQGCKQLVHLDIRDCWGFHGVDAEILKLASHIPTFMWEGSIRIPEIESSYVHDLKLDHELFCDQINHRTAFMI* 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2082 905 Gene3D MFS general substrate transporter like domains 11 578 IPR036259 -
Vvi18g2082 905 Pfam POT family 107 529 IPR000109 GO:0016020|GO:0022857|GO:0055085
Vvi18g2082 905 SUPERFAMILY F-box domain 626 681 IPR036047 GO:0005515
Vvi18g2082 905 Gene3D - 619 670 - -
Vvi18g2082 905 CDD MFS_NPF4 39 571 - -
Vvi18g2082 905 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 36 574 - -
Vvi18g2082 905 Gene3D Ribonuclease Inhibitor 700 869 IPR032675 -
Vvi18g2082 905 SUPERFAMILY MFS general substrate transporter 39 572 IPR036259 -
Vvi18g2082 905 SUPERFAMILY RNI-like 734 852 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2082 Vvi-Chr18 28875254 28886307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2082 18 571 Organic Solute Cotransporters AT1G59740 73.646 0.0 855
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2082 - - vvi:100243054 1135.17