Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2076 ATGATGATCACCATGGTGAAGCAACAACCACTGTGGTCTGCAGCAGTGCTGCTCCTGCTGCTGCTTAGTCTACAATTCTCGACTCAGGTTGCAAGATCGCAGAGGGTTCCGGCGATCTTTTGTTTTGGAGACTCGTTGATAGATGATGGCAACAACAATTTCCTGGACTCCATAGCCAAATCAAACTACTACCCTTACGGGATTGATTTCAGAGGCCCTACTGGCAGGTTTTGTAATGGGAAAACCATTGTTGATCTACTTGCTGAGATGTTAGGTGTTTCATATCCTCAACCTTTCGCAGATCCTGGCTCAACAGGGTCCAAAATATTTAGTGGAGTGAATTATGCTTCAGCAGCTGCTGGCATCCTTGATGAAACTGGCCAAAACTACGGACAAAGGTTTAGCTTGAGCCAACAGGTGCTGAACTTTGAGACCACATTGAGCCAAATGAGAACAATGGCGAATGGAACAACTCTGAGTCGGTACTTGGCCAAATCCATAGTTATAATGGTTTTCGGGAGCAATGACTACCTCAACAACTACCTCATGCCTTCCCTCTACCCTTCCAGCTACAACTACAGTCCCCCGGATTTCGCCAACCTCCTCCTCAACCATTATGCACGGCAAATTTTGGCACTGTATAGTTTAGGGTTAAGGAAGTTCTTCCTAGCCGGGATTGGACCACTTGGTTGCATGCCAAACCAGCGAGCCTTGGCGCCGCCCGGTCGATGTCTCGACTACGATAATCAGATACTTGGTACCTTCAATGAAGGGCTCAGGGCACTCGTCAACCAGCTGAATGGGAACCATCCTGGCTCCATCTTTGTGTATGGCAATACTTATGGTATTTTTGGTGACATTCTCAATAATCCTGCTACTTATGGGTTCAGTGTAGTGGATAGAGGGTGCTGTGGACTAGGAAGAAACCAAGGGCAGATAACATGTCTGCCTATGCAAATGCCATGCCTAAACAGGAATGAATATGTGTTTTGGGATGCCTTCCATCCAACCACGGCTGCCAATGTCATCCTTGCTCAAACGGCCTTCTATGGTCCTCCCTCTGATTGCTACCCCATCAATGTCCAGCAAATGGCTCTCATTTAA 1104 0.4719 MMITMVKQQPLWSAAVLLLLLLSLQFSTQVARSQRVPAIFCFGDSLIDDGNNNFLDSIAKSNYYPYGIDFRGPTGRFCNGKTIVDLLAEMLGVSYPQPFADPGSTGSKIFSGVNYASAAAGILDETGQNYGQRFSLSQQVLNFETTLSQMRTMANGTTLSRYLAKSIVIMVFGSNDYLNNYLMPSLYPSSYNYSPPDFANLLLNHYARQILALYSLGLRKFFLAGIGPLGCMPNQRALAPPGRCLDYDNQILGTFNEGLRALVNQLNGNHPGSIFVYGNTYGIFGDILNNPATYGFSVVDRGCCGLGRNQGQITCLPMQMPCLNRNEYVFWDAFHPTTAANVILAQTAFYGPPSDCYPINVQQMALI* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2076 367 CDD SGNH_plant_lipase_like 37 352 IPR035669 -
Vvi18g2076 367 Pfam GDSL-like Lipase/Acylhydrolase 39 346 IPR001087 GO:0016788
Vvi18g2076 367 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 16 365 - -
Vvi18g2076 367 SUPERFAMILY SGNH hydrolase 39 347 - -
Vvi18g2076 367 Gene3D SGNH hydrolase 24 350 IPR036514 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2076 Vvi-Chr18 28788286 28791205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2076 36 364 Acyl Lipid Metabolism Gene Families AT4G10950 36.527 1.27e-70 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2076 - - vvi:100267169 731.095