Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2057 ATGTCTAAACTTCTCCTTTGTTTTCTTTTCTTTCTCTCGTCCTCTCAGCTTCTTTCCTCCTCTTTCTCTTTCTCTAATTCCACCAAACTATGCCCGCATCAGCAGGCTCTTGCTCTGCTCCACCTTAAGCAATCCTTTTCTATTGATAATTCCAGTTCTTGGGATTGTGATTCCAATGGCATCACTTCTTATCCTAAAACAGAGTCTTGGAAGAAGGGTAGTGATTGCTGCTCATGGGATGGGGTCACATGTGATTGGGTGACAGGCCATATAATTGGGCTGGACCTCAGTTGCAGCAGGCTCTTTGGCACCATCCATTCCAACACAACCCTTTTCCTCCTTCTTCATCTACAAAGGCTCAACCTGGCTTTCAACAACTTCAATGGGTCCTCTATTTCAGCTGGGTTTGGTCGGTTCTCAAGCTTGACGCATTTCAATCTCTCTTACTCTGGATTTTCAGGCCTAATTGCACCAGAAATCTCTCACCTCTCCACCTTGGTTTCACTCGATCTGTCTGAGAATTATGGAGCAGAGTTTGCCCCGCATGGCTTCAATTCTCTGGTTCAAAATTTAACCAAATTGCAGAAGCTTCACCTTAGAGGTATTTCCATCTCTTCAGTTTTTCCTAATTCCTTGCTAAATCGGTCTTCTTTGATATCAATAGATCTCTCTGGGTGTGGATTGCATGGGAGATTCCCTGACCATGACATTCACCTTCCGAAACTCGAGGTTCTCGACTTATGGAGAAATGATGATCTCAGTGGAAACTTCCCACGATTCAGTGAGAACAATTCCCTCATGGAGTTGGATTTATCATTCACAAATTTGAGTGGAGAGCTTCCTGCTTCAATTGGTAATCTAAAGTCGTTACAGACTTTGGATCTCTCCGGTTGCGAATTCTCAGGGTTCATTCATACTTCAATTGGCAATCTAAAGTCTTTACAGACTTTGGATCTCTCCGGTTGCGAATTCTCAGGGTTCATTCCTACTTCAATTGGCAATCTAAAGTCTTTACAGACTTTGGATCTCTCCGATTGCGAATTCTCAGGGTCCATCCCTACTTCAATTGGTAATCTAAAGTCTTTACAGACTTTGGATCTCTCCAATTGTGAATTCTTAGGGTCCATCCCTACTTCAATTGGCAATCTAAAGTCTTTACGGTCTTTATACCTTTTTAGCAACAATTTTAGTGGTCAGCTTCCACCATCAATTGGAAATCTAACAAACCTTCAAAACTTAAGATTCTCTAATAACTTGTTCAATGGGACAATACCATCTCAATTGTATACTCTGCCATCATTGGTGAATTTAGATCTCAGTCATAAAAAACTCACTGGTCATATTGGTGAATTCCAATTTGATTCATTAGAGTATATTGATTTGAGCATGAATGAGTTACATGGGCCAATTCCAAGTTCAATATTTAAGCTTGCAAATCTTGAATTTCTCTATCTTTATTCAAATAACTTGAGTGGTGTTTTGGAGACAAGCAACTTTGGAAAACTTAGAAACCTCACTTTGCTTGTTCTCTCAAACAACATGCTCTCATTGATCACCTCTGGCAATTCCAACTCCATTTTACCCTATATTGAGAGGCTAGACCTTTCAAACAATAAGATTAGTGGAATATGGTCATGGAATATGGGAAAGGATACACTGTTGTACTTGAATCTCTCTTATAACATCATAAGTGGGTTTGAGATGCTTCCATGGAAAAATATGCACATTCTAGATCTTCATTCCAACTTGTTGCAAGGACCACTTCCAATTCCTCCAAATTCTACATTTTTCTTTTCAGTCTCCCATAACAAATTGAGTGGAGAAATTTCACCCCTGATTTGCAAAGTGAGTTCCATGGGAGTTCTTGATTTGTCTAGTAACAACTTGAGTGGCATGCTTCCTCATTGTTTGGGAAATTTTAGCAAAGATCTCTCTGTTTTGAATTTACGAAGGAATAGATTTCATGGCACCATTCCTCAAACATTTTTAAAGGGCAATGCTATCAGAAATCTTGACTTCAACGATAATCAGTTGGAAGGCCTAGTACCTCGATCTTTGATCATTTATAGAAAACTTGAAGTTCTAGACCTTGGGAATAATAAGATAAATGATACATTTCCTCATTGGTTGAGAACTCTTCCAGAGTTGCAAGTTCTTGTTTTGCGCTCTAATAGTTTCCATGGTCATATAGGGTTTTCCAAGATCAAATCCCCATTCATGAGCCTAAGAATCATTGATCTTGCTCACAATGATTTCGAGGGTGACTTGCCTGAAATGTATTTGAGAAGTTTGAAAGCTATAATGAATATAGATGAAGGCAACATGGCAAGAAAATACATGGGGGAATATTATTATCAAGATTCCATAACAGTGACAACAAAAGGGTTGGATGTTGAACTTGTGAAAATCTTGAATACTTTCACAACGGTTGATTTATCAAGCAACAAATTCCAAGGAGAGATTCCCAAGTCCATTGGAAATCTTAATTCACTTCGAGGGCTTAATTTGTCTCATAATAACCTTACAGGACTTATTCCATCATCTTTTGGAAATTTGAAGTCGCTTGAATCATTGGACCTCTCTTCAAACGAGCTAATTGGGAGTATTCCTCAACAATTAACAAGTTTGACATTTCTTGAAGTTTTGAATCTTTCCCAAAACCATCTTACTGGATTCATACCTCGAGGTAATCAGTTTGACACTTTTGGAAATGATTCATACAATGAGAACTCAGGGTTGTGTGGATTTCCGTTGTCAAAGAAATGCATAGCTGATGAAACACCGGAGCCTTCAAAAGAAGCAGATGCAAAGTTTGATGGTGGATTTGATTGGAAAATCACATTGATGGGATATGGATGTGGATTGGTTATTGGGTTGTCTCTTGGGTGTCTCGTTTTCTTAACTGGGAAACCTAAATGCCTTGCTTTGCTCCACCTTAGGCAATCATTTTCTATTGATAATTATAGTTCTTGGTATTGCGATTTCAATGACATCACTTCTTATCCCAAAACAAAGCCTAATTTCACCAGAAATCTCTCACCTCTCCAACTTGTGGTCAGCTTCCACCATCAATTGGAAATCTAA 3084 0.3888 MSKLLLCFLFFLSSSQLLSSSFSFSNSTKLCPHQQALALLHLKQSFSIDNSSSWDCDSNGITSYPKTESWKKGSDCCSWDGVTCDWVTGHIIGLDLSCSRLFGTIHSNTTLFLLLHLQRLNLAFNNFNGSSISAGFGRFSSLTHFNLSYSGFSGLIAPEISHLSTLVSLDLSENYGAEFAPHGFNSLVQNLTKLQKLHLRGISISSVFPNSLLNRSSLISIDLSGCGLHGRFPDHDIHLPKLEVLDLWRNDDLSGNFPRFSENNSLMELDLSFTNLSGELPASIGNLKSLQTLDLSGCEFSGFIHTSIGNLKSLQTLDLSGCEFSGFIPTSIGNLKSLQTLDLSDCEFSGSIPTSIGNLKSLQTLDLSNCEFLGSIPTSIGNLKSLRSLYLFSNNFSGQLPPSIGNLTNLQNLRFSNNLFNGTIPSQLYTLPSLVNLDLSHKKLTGHIGEFQFDSLEYIDLSMNELHGPIPSSIFKLANLEFLYLYSNNLSGVLETSNFGKLRNLTLLVLSNNMLSLITSGNSNSILPYIERLDLSNNKISGIWSWNMGKDTLLYLNLSYNIISGFEMLPWKNMHILDLHSNLLQGPLPIPPNSTFFFSVSHNKLSGEISPLICKVSSMGVLDLSSNNLSGMLPHCLGNFSKDLSVLNLRRNRFHGTIPQTFLKGNAIRNLDFNDNQLEGLVPRSLIIYRKLEVLDLGNNKINDTFPHWLRTLPELQVLVLRSNSFHGHIGFSKIKSPFMSLRIIDLAHNDFEGDLPEMYLRSLKAIMNIDEGNMARKYMGEYYYQDSITVTTKGLDVELVKILNTFTTVDLSSNKFQGEIPKSIGNLNSLRGLNLSHNNLTGLIPSSFGNLKSLESLDLSSNELIGSIPQQLTSLTFLEVLNLSQNHLTGFIPRGNQFDTFGNDSYNENSGLCGFPLSKKCIADETPEPSKEADAKFDGGFDWKITLMGYGCGLVIGLSLGCLVFLTGKPKCLALLHLRQSFSIDNYSSWYCDFNDITSYPKTKPNFTRNLSPLQLVVSFHHQLEI* 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2057 1027 SMART LRR_typ_2 502 525 IPR003591 -
Vvi18g2057 1027 SMART LRR_typ_2 114 139 IPR003591 -
Vvi18g2057 1027 SMART LRR_typ_2 191 214 IPR003591 -
Vvi18g2057 1027 SMART LRR_typ_2 852 875 IPR003591 -
Vvi18g2057 1027 SMART LRR_typ_2 477 500 IPR003591 -
Vvi18g2057 1027 SMART LRR_typ_2 828 851 IPR003591 -
Vvi18g2057 1027 SMART LRR_typ_2 287 310 IPR003591 -
Vvi18g2057 1027 SMART LRR_typ_2 407 431 IPR003591 -
Vvi18g2057 1027 SMART LRR_typ_2 335 359 IPR003591 -
Vvi18g2057 1027 SMART LRR_typ_2 876 899 IPR003591 -
Vvi18g2057 1027 SMART LRR_typ_2 616 639 IPR003591 -
Vvi18g2057 1027 SMART LRR_typ_2 383 406 IPR003591 -
Vvi18g2057 1027 SMART LRR_typ_2 311 334 IPR003591 -
Vvi18g2057 1027 SUPERFAMILY L domain-like 582 919 - -
Vvi18g2057 1027 Pfam Leucine rich repeat 808 865 IPR001611 GO:0005515
Vvi18g2057 1027 FunFam Tyrosine-sulfated glycopeptide receptor 1 684 927 - -
Vvi18g2057 1027 Gene3D Ribonuclease Inhibitor 522 929 IPR032675 -
Vvi18g2057 1027 PRINTS Leucine-rich repeat signature 530 543 - -
Vvi18g2057 1027 PRINTS Leucine-rich repeat signature 852 865 - -
Vvi18g2057 1027 SUPERFAMILY L domain-like 255 587 - -
Vvi18g2057 1027 Pfam Leucine rich repeat N-terminal domain 33 85 IPR013210 -
Vvi18g2057 1027 SUPERFAMILY L domain-like 75 347 - -
Vvi18g2057 1027 ProSiteProfiles Leucine-rich repeat profile. 830 851 IPR001611 GO:0005515
Vvi18g2057 1027 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 187 454 - -
Vvi18g2057 1027 Pfam Leucine Rich Repeat 879 895 IPR001611 GO:0005515
Vvi18g2057 1027 Pfam Leucine Rich Repeat 313 335 IPR001611 GO:0005515
Vvi18g2057 1027 Pfam Leucine Rich Repeat 361 383 IPR001611 GO:0005515
Vvi18g2057 1027 Pfam Leucine Rich Repeat 337 359 IPR001611 GO:0005515
Vvi18g2057 1027 Pfam Leucine Rich Repeat 289 311 IPR001611 GO:0005515
Vvi18g2057 1027 Gene3D Ribonuclease Inhibitor 452 521 IPR032675 -
Vvi18g2057 1027 Gene3D Ribonuclease Inhibitor 28 132 IPR032675 -
Vvi18g2057 1027 Gene3D Ribonuclease Inhibitor 133 451 IPR032675 -
Vvi18g2057 1027 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 368 922 IPR046956 -
Vvi18g2057 1027 FunFam Cf2-like protein 29 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2057 Vvi-Chr18 28516219 28527002 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2057 6 965 Receptor kinase-like Gene Family AT1G47890 37.598 1.18e-164 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2057 - - vvi:100255139 1869.36