Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2056 ATGAGCCTAAGAATCATTGATCTTGCTCACAATGATTTCGAGGGTGACTTGCCTGAAATGTATTTGAGAAGTTTGAAAGCAACAATGAATGTAGATGAATGCAACATGACAAGAAAATACATGGGGGACAGTTATTATCAAGATTCCGTAATGGTGACAATCAAGGGGTTAGAGATTGAATTTGTGAAAATCTTGGATACTTTCACAACAATTGATTTATCAAGCAATACATTCCAAGGAGAGATTCCAAAGTCCATTGGAAATCTTAATTCACTCCGAGGACTCAATTTGTCTCATAACAACCTTGTAGGACATATCCCACCATCTTTCAAAAATTTGAAGTTGCTTGAATCATTGGACCTTTCTTCAAACAAGCTCATTGGGAGAATTCCTCAAGAATTAACAAGTTTGACATTTCTTGAAGTTTTGAATCTTTCCCAAAACAATCTCACCGGATTTATACCTCGAGGCAATCAATTTGAGACATTTGGAAATGATTCATACAACGAGAACTTAGGGTTATGTGGATTTCCATTATCAAAGAAATGCACAACTGATGAAACACTAAAGCCTTCAAAAGAGATGGATGCAGAGTTTGAAAGTGGGTTTGATTGGAAAATCACATTGATGGGATATGGATGTGGATTGATAATTGGGTTGTCTCTTGGGTGTCTCATTTTCTTAACTGGGAAACCTAAATGGTTGACAACGATGGTTGAAGAGAACATTCACAAGAAGATCACAAGGTCTAAAAGAAGTACTTGTAGAAGAGGAGCAAGAAGAAAGTAG 789 0.365 MSLRIIDLAHNDFEGDLPEMYLRSLKATMNVDECNMTRKYMGDSYYQDSVMVTIKGLEIEFVKILDTFTTIDLSSNTFQGEIPKSIGNLNSLRGLNLSHNNLVGHIPPSFKNLKLLESLDLSSNKLIGRIPQELTSLTFLEVLNLSQNNLTGFIPRGNQFETFGNDSYNENLGLCGFPLSKKCTTDETLKPSKEMDAEFESGFDWKITLMGYGCGLIIGLSLGCLIFLTGKPKWLTTMVEENIHKKITRSKRSTCRRGARRK* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2056 262 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 60 183 - -
Vvi18g2056 262 Pfam Leucine rich repeat 69 126 IPR001611 GO:0005515
Vvi18g2056 262 PRINTS Leucine-rich repeat signature 116 129 - -
Vvi18g2056 262 PRINTS Leucine-rich repeat signature 137 150 - -
Vvi18g2056 262 Gene3D Ribonuclease Inhibitor 1 191 IPR032675 -
Vvi18g2056 262 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 2 226 IPR045273 -
Vvi18g2056 262 Pfam Leucine Rich Repeat 140 156 IPR001611 GO:0005515
Vvi18g2056 262 SUPERFAMILY L domain-like 2 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2056 Vvi-Chr18 28510764 28511552 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2056 3 235 Receptor kinase-like Gene Family AT3G05660 44.915 1.48e-57 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2056 - - vvi:100249990 508.449