Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2045 ATGAAACAAATTCATGTTCTGGGTTCTCATTTCAAGGATGGGGGTTCAGTTACTGCAGGGAATGCTTCTAGCATAAGTGATGGTGCGGCTGCATTAGTGCTAGTGAGTGGTAAGAAGGCAGTTGAGCTTAGACTCCAAGTGATTGCTAAGATTGCAGGATATGGTGATGCTGCTCAGGCACCTGAGTTGTTTACAACTACCCCAGCCCTTGCAATTCCAAAAGCTATTTCTAATGCGGGCCTGAAGGCTTCTCAAATTGATTACTATGAAATAAACAAGGCTTTCGCCTTGCTGCTAGAGGCGGAATATGAGGGAAATTTGAAGGAAATCCTTGGTTACACTAAGGATGATGTGGTATCAAGTGATTTTATCGGGGACCGCAGGTCGAGTATTTTTTATGCCAAGGCTGGAATTGCTCTGAATGACAACTTTATCAAGTTGGTCTCTTGGTATGATAATGAATGGGTTTACAGTGGTGCTGAAGATGCTGCTGAATTGTCCATTAAAGGTGTTCAACTTGAACACCGGAAGGGCTTGGTGAGGAAAGTGAGACCTCACCTTCTAGCTGGCAAAATTTAA 579 0.4352 MKQIHVLGSHFKDGGSVTAGNASSISDGAAALVLVSGKKAVELRLQVIAKIAGYGDAAQAPELFTTTPALAIPKAISNAGLKASQIDYYEINKAFALLLEAEYEGNLKEILGYTKDDVVSSDFIGDRRSSIFYAKAGIALNDNFIKLVSWYDNEWVYSGAEDAAELSIKGVQLEHRKGLVRKVRPHLLAGKI* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2045 192 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 88 151 IPR020829 GO:0016620
Vvi18g2045 192 Pfam Thiolase, N-terminal domain 7 36 IPR020616 GO:0016747
Vvi18g2045 192 Gene3D - 1 51 IPR016039 GO:0016746
Vvi18g2045 192 FunFam Glyceraldehyde-3-phosphate dehydrogenase GAPCP1 chloroplastic 96 153 - -
Vvi18g2045 192 PANTHER ACETYL-COA C-ACYLTRANSFERASE 2 97 - -
Vvi18g2045 192 Gene3D Dihydrodipicolinate Reductase; domain 2 60 153 - -
Vvi18g2045 192 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 84 151 - -
Vvi18g2045 192 SUPERFAMILY Thiolase-like 8 121 IPR016039 GO:0016746
Vvi18g2045 192 Pfam Thiolase, C-terminal domain 46 97 IPR020617 GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2045 Vvi-Chr18 28352259 28357616 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2045 1 96 Acyl Lipid Metabolism Gene Families AT5G48880 41.667 8.62e-15 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2045 K00626 - vvi:100855181 164.466