Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2043 ATGGAAACTTATGCTGACAAAAGGCATCCTGCACTTTTTGTCATCAATATTATGAGAGGTGAGGTGCATGCTGTTGGAGGGATTGGCAAACCCTTGAGTGCAGGACCAGTTACATGGGCTTCATTGGCGGAAGGTTTCGGTCAATATTTGGTTTTCTGTTGGGTGCTCATCAGGGACAAGGAAGCAATAGCAAAACTGTCAAGGGCAATAGCATTCAAGGCAGATCTTCACCTTCTACACCTGAGGGCAGCCTTTCATGAGCACATTGGAGATGTGTTGGGTGCACTGCGAGACTGTAGAGCTGCCCTCTCTGTAGATCCTGACCATCAAGAGATGTTGGAACTTCGTAGCCGTGTCAACAGCCATTACCCATTCCACCCATGA 384 0.4792 METYADKRHPALFVINIMRGEVHAVGGIGKPLSAGPVTWASLAEGFGQYLVFCWVLIRDKEAIAKLSRAIAFKADLHLLHLRAAFHEHIGDVLGALRDCRAALSVDPDHQEMLELRSRVNSHYPFHP* 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2043 127 Gene3D Tetratricopeptide repeat domain 58 123 IPR011990 GO:0005515
Vvi18g2043 127 PANTHER ETO1-RELATED 58 122 IPR044631 GO:0010105
Vvi18g2043 127 Pfam Acylamino-acid-releasing enzyme, N-terminal domain 2 54 IPR045550 -
Vvi18g2043 127 SUPERFAMILY TPR-like 60 117 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2043 Vvi-Chr18 28333116 28333499 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2043 - - vvi:100266551 125.561