Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2041 ATGGCTTCTAGCAGCTCCTTGAAAGCGTCGTCTTCCACTTCTAATTGTGATGGTAATAATTATCATGTGTTCTTGAGTTTTAGAGGTGAAGATACCCGCCGGACTTTCACAAGTCATCTTTATGCTAATTTGGTTGCACGTGGAATTCACACCTTCAGAGATGATGAAGAACTTGAGAAAGGAGGAGATATCGCATCAAATCTCTCGAGAGCTATCGAAGAATCAAAGATTTTTATTATTATTTTCTCAGAACACTATGCTGATTCCAAGTGGTGTTTGAATGAACTGGTAAAGATCATCGATTGTATGACAGAAAAGAAATCAGTGGTTTTGCCGGTTTTCTACCATGTGGAGCCAACAGATGTACGAAATCAAGGAGGAAGTTTTGAAGATGCATTTTTGGAGCATGCAAAAGATGCAGATCAAGAGAAGAAGAAGACAATAGAAACGTGGAAGAATGCCTTGAAGACAGCAGCCAACCTATCTGGATATCATCTGCAAAATCATGATGGTGCGGCTACACTAGTGCTAGGGAGCGGTAAGAAGGCAGTTGAGCTTAGACTCCAAGTGATTGCTAAGATTGCAGGATATGGTGATGCTACTCAGGCTTCTCAAATTGATTACTATGAAATAAATGAGGCTTTCGCCGTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCTGGTTTCAAGTCACCAGAGGATTTGGAGGCTTTTCAGAAGCTGCATCTATCAGTGGCAATTTGCTCTTACAGGAGGAGCAAGTTACAGTTGCAGCTAGAAGCGGAATATGAGGGAAATTTGAAGGAAATCCTTGGTTACACTAAGGATGATGTGGTATCAAGTGACTTTGTGGGAGACTGCAGGTCGAGTATTTTTTATGCCAAGGCTGGAATTGCTCTGAATGACAACTTCATCAAGTTGGTCTCTTGGTATGGTATGATAATGAATGGGTTTACAGAGGAGGATGTTAAAGGAGAAGCTCAATATAAACATACAGATTTTGTAAAAGCAGTGGTGCTGAAGATGCTACTTAGCTGGTCATCCATTAAAGGTGTTCAGCTTGAACACCGGAAGGTTCAACCTGGAAACATATCAGTTCTTTGA 1113 0.4106 MASSSSLKASSSTSNCDGNNYHVFLSFRGEDTRRTFTSHLYANLVARGIHTFRDDEELEKGGDIASNLSRAIEESKIFIIIFSEHYADSKWCLNELVKIIDCMTEKKSVVLPVFYHVEPTDVRNQGGSFEDAFLEHAKDADQEKKKTIETWKNALKTAANLSGYHLQNHDGAATLVLGSGKKAVELRLQVIAKIAGYGDATQASQIDYYEINEAFAVVALANQKLLGLDPGFKSPEDLEAFQKLHLSVAICSYRRSKLQLQLEAEYEGNLKEILGYTKDDVVSSDFVGDCRSSIFYAKAGIALNDNFIKLVSWYGMIMNGFTEEDVKGEAQYKHTDFVKAVVLKMLLSWSSIKGVQLEHRKVQPGNISVL* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2041 370 Gene3D - 18 194 IPR035897 -
Vvi18g2041 370 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 185 - -
Vvi18g2041 370 SUPERFAMILY Thiolase-like 169 231 IPR016039 GO:0016746
Vvi18g2041 370 PANTHER TMV RESISTANCE PROTEIN N-LIKE 9 169 - -
Vvi18g2041 370 Pfam TIR domain 20 164 IPR000157 GO:0007165
Vvi18g2041 370 Gene3D Dihydrodipicolinate Reductase; domain 2 247 315 - -
Vvi18g2041 370 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 261 314 IPR020829 GO:0016620
Vvi18g2041 370 SMART till_3 20 161 IPR000157 GO:0007165
Vvi18g2041 370 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 263 314 - -
Vvi18g2041 370 Gene3D - 198 246 IPR016039 GO:0016746
Vvi18g2041 370 ProSiteProfiles TIR domain profile. 19 188 IPR000157 GO:0007165
Vvi18g2041 370 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 164 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2041 Vvi-Chr18 28306161 28320509 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2041 22 176 Miscellaneous Gene Families AT4G19920 40.000 3.30e-32 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2041 - - vvi:100255036 313.923