Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2037 ATGTGCAACCTAATATCCTCTTCTTCTACTTCTGTCCTTCGATGGAATCATGATGTTTTCTTGAGTTTTAGAGGTGAAGATACTCGCTACAAGTTTACTGATCATCTGTACGCAGCATTGGTTAATAAAGGCATACGAACTTTTAGAGATGATAAACTCAAGAGAGGAGAAGAGATCGCACCGTTACTCTTGAAAGTTATTGAAGAATCAAGGCTTTCCATAGTTGTATTTTCAGAAAATTATGCTAGTTCTAGATGGTGTTTAGATGAGCTGGTAAAAATCATGGAGTGCAGACAAAAAATTAGACAAATATTGGTACCAATTTTCTACCATGTGGATCCGTCCGATCTTCGGACACAAAAGGGGAGTTTTGAAAAATCTTTTGCCAGCCATGAAAGACATGGAAGGGATTCCAAGGAGAAGATACAAAGGTGGAGGGCTGCATTGACTGAAGCAAGTAATCTATCAGGATGGCATCTCTTTGAAGGATATGAGTCGGAGCACATAAAAAAAAATCACTAA 522 0.3831 MCNLISSSSTSVLRWNHDVFLSFRGEDTRYKFTDHLYAALVNKGIRTFRDDKLKRGEEIAPLLLKVIEESRLSIVVFSENYASSRWCLDELVKIMECRQKIRQILVPIFYHVDPSDLRTQKGSFEKSFASHERHGRDSKEKIQRWRAALTEASNLSGWHLFEGYESEHIKKNH* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2037 173 PANTHER TMV RESISTANCE PROTEIN N-LIKE 8 160 - -
Vvi18g2037 173 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 158 IPR035897 -
Vvi18g2037 173 ProSiteProfiles TIR domain profile. 15 153 IPR000157 GO:0007165
Vvi18g2037 173 Gene3D - 11 172 IPR035897 -
Vvi18g2037 173 SMART till_3 16 155 IPR000157 GO:0007165
Vvi18g2037 173 Pfam TIR domain 17 153 IPR000157 GO:0007165
Vvi18g2037 173 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2037 Vvi-Chr18 28271405 28273634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2037 11 162 Miscellaneous Gene Families AT1G57830 39.474 1.43e-30 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2037 - - vvi:104882704 320.087