Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2025 ATGGTTGACACCTGTAAAGGGGATTTGAAAAAAAAGCTGCAGACGGTTAAGGGGGGGAGCGTTTCTGTTATAGTAGAAGAGGCCAGCTGCAGGAGAAGGGGGAGCTTTTCGGTGCTGGTCTGGGAGATGTTTTCAGGGGAGAGTTTTCCTTGCCGGTTTTCAAGGATTTTTTGGGAGAGGAGCAAGCCGTTAGAGATATTGGGACGAGGAGGAGATATTTTGAGAGAGAGGGGGATTTCTGGAGCTGGGGGAGGAAGCAAGTTAGAGAAGGGAGAGCTGAAACAGAGGAAAGAAAGGGGACGTTCTCAGGTACGTTTGCTAGACCTCATTTTGATTGCCATTGATGTTTCTTTTGGTTGCTGTGACTGTGTTGTGACATATCCGCTCCCTGTTCTTCATGGTACATATTTGGGTCTTAGCAAGAGGCAATGTTGCCTACCCATTAGATATGAGATACTGTCACTTCGAGAACAGGGTTTGGATGTTCAGCTGAGAGTGTTAACAGAGAAGAAGAGGCCTCCTGAGAGTGAGGGGCTTGAGGGAGAGGATAATGACTCTCACTCTTCATTAGGTGATTCAGTGTTGGACACTGCAGGTACAGAGATTGAAAAGACAGAGAAGGAAGCTCCAAAAGAGAAAGCTGGAGCTTCGGATGACCTTGAGTCCAAGGAAGTGGAGATGGATGATTGGCTCTTTGGGTTTACTCAATTGTTCAGAACCCATGTTGGCAGTCTATCCGAATCCCAGGTTGCTGCAGAGGATGCTATGAATGTGCCCGTGAGGAACTTACCTGAAACTGAAAACAAGGATTTGTATGAAGTTTCAGATCCAAGCAGAGTTGAAATCGATAGTTCAGTTGCTGTTAAAGATGATTGTACCGGATTGCTCGCTGGGGATGCCTCTGGTATTAGTTCGCCAACAAAAGAGCCAAAGCTTTTGTCTGTTGATGCTGAATCTTCTGTTCAAAGGTCAACGACAGCAGTTGAAGATGATCAAACTAAAGTGCTTGGTGGGAATGGTTCTGGTGTTAAGTTAGAGACACTGCAAGTTGCAAATACCATTAATAATGTGGCAAGAGATGGTACCACCTATGCTACAGTACTTACCCGAGCAATATTTACTGAAGGGTGCAAATCGGTAGCTGCTGGAATGAATGTTAAGGGATCATTCTTTCAATACCTGAAAATCACAGAAACCGGTTCATGGAAAGAGCAAGCAAAGCTGTCCTCGAACGACGCCGGCGGCTTGCCGCCGGCGACGAAGCGCCTCTGTCATCACCGGAACGCCAAGCAACCACAGCCATGCTACTCAGGATCTCTAGAACTCCATTGCAGCAGGGAACTATCCCGAGTGGAAACTTCTGCAAATGAACCATCAAATTCAAAATCACAGCAGTGGGAGCACTTGCTCCAGTTCTACACCGATGACGCTCCAGGCTTGGAGATTACTCTGATGGTGGTTCTCGTGATGAGCCTTTGCTCTATTGACTTCGTCACTACTCTTCATGTCTTCGGTGAAATATATCGCCATAGGATCTGGTGGAGTGGCTTGATCAAGGACCTCTTCAGCGTCTTTTCTAACACTGTGGCATGTCTCAGTGTTTTGGACCTGTTTCTTACCGAGCACTTGGAGGTATTGACTAAGCTTGGCGATTATGTCAACAAAATTCCAAAGATCCAATTACGTGGGGACATGGTTCTGGGAACCAAGAGCATTGTCATTAATATTCCATGCCATTGGAGGATGGTTGAGCTTGATGCCTTCTGTGTGGTCACAGATGACCTCAACATGAATATTGGTAAGTCCAACAGCTGA 1815 0.4639 MVDTCKGDLKKKLQTVKGGSVSVIVEEASCRRRGSFSVLVWEMFSGESFPCRFSRIFWERSKPLEILGRGGDILRERGISGAGGGSKLEKGELKQRKERGRSQVRLLDLILIAIDVSFGCCDCVVTYPLPVLHGTYLGLSKRQCCLPIRYEILSLREQGLDVQLRVLTEKKRPPESEGLEGEDNDSHSSLGDSVLDTAGTEIEKTEKEAPKEKAGASDDLESKEVEMDDWLFGFTQLFRTHVGSLSESQVAAEDAMNVPVRNLPETENKDLYEVSDPSRVEIDSSVAVKDDCTGLLAGDASGISSPTKEPKLLSVDAESSVQRSTTAVEDDQTKVLGGNGSGVKLETLQVANTINNVARDGTTYATVLTRAIFTEGCKSVAAGMNVKGSFFQYLKITETGSWKEQAKLSSNDAGGLPPATKRLCHHRNAKQPQPCYSGSLELHCSRELSRVETSANEPSNSKSQQWEHLLQFYTDDAPGLEITLMVVLVMSLCSIDFVTTLHVFGEIYRHRIWWSGLIKDLFSVFSNTVACLSVLDLFLTEHLEVLTKLGDYVNKIPKIQLRGDMVLGTKSIVINIPCHWRMVELDAFCVVTDDLNMNIGKSNS* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2025 604 MobiDBLite consensus disorder prediction 168 193 - -
Vvi18g2025 604 Gene3D - 349 385 IPR027413 -
Vvi18g2025 604 SUPERFAMILY GroEL equatorial domain-like 349 385 IPR027413 -
Vvi18g2025 604 MobiDBLite consensus disorder prediction 168 189 - -
Vvi18g2025 604 Pfam Sec61beta family 469 505 IPR016482 -
Vvi18g2025 604 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 184 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2025 Vvi-Chr18 28036802 28045466 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2025 - - vri:117922386 157.147