Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2024 ATGCTGGAGAGGAATATTGTTTCTTGGACTGCTCTCGTTTCTAGGTATGCCCAGCATGGTTGGCCTGATGAGTGTTTTAGGGTCTTTACGGACATGCTGATTTGTCACCGGCCAACGGAGTTTGCGTTTGCCAGCGTGATTAGCACTAGTGGCGGGGACGGCGACTGTGGACGGCAGGTACACGCGCTTGCAGTGAAGACTTCTTTTGATTCTTGTGTTTATGTGGGGAATGTTCTTATTATGATGTATTGCAGGAGTTGTGGTGGCACGGATGAGGCTTGGAATGTGTACGAGGCAATGGGGTTTCGCAATTTGGTTTCTTGGAATTTTATGATTACAGGGTTTCAGGTCTGTGGATGTGGAAATCGAGCACTTGAGATCTTCTCACAGATGCACTTTGGTGGAATTCGGTTCGATCGTGCCACACTGGTCAACATTTTTTCTTGCTTGTGTGGAATGGGTGATGGTCTTGAATGTTGTTTTCAATTGCAGTGTCTTACTACAAAAACTGGGTTTATCTCAGAAATTGAAGTGCCCACTGGCTTGGTCAAGGCTTATTCTAGTCTAGGAGGAGAGGTCAATGATTGTTATAGGATCTTCTTGGAATTGGATGGCCGTCAAGATGTTGTTTCTTGGACTGGGATTATAGCAGTGTTTGCAGAACGGGACCCAGAAGAAGCATTCCTCCTCTTTCGGCAGTTTCTTCGAGAGTGTTTGGCTCCAGATCGTCATATGTTCTCCATTGTCTTAAAAGCTTGTGCTGGTCTTGCAACTGAGGGGCATGCATTGACTGTCCAGTCACATGTTCTAAAAGTTGGATTTGAGGATGACATTGTGCTTACAAATGCCTTGATTCATACCTGTGCTAGGTGTGGCTCCGTTGCATTGTCAAAGCAAGCTTTTGACAAAATCGGATCCCGTGATACAGTTTCTTGGAATTCAATGTTGAAGGCATATGCTATGCATGGGCAAGGTAAGGAGGCATTGCAGCTTTTTTCACAAATGGATGCCCAACCTGATGGTGCCACCTTTGTTGCCCTCATCTCAGCTTGTAGTCATGCTGGAATGGTGGAAGAAGGAGCCAAAATATTTGAGGCAATGTCTAACAATCATGGTATTGTTCCTCAACTTGATCATTACGCCTGCATGGTTGATATTCTTGGTCGAGCTGGTCGAATTTATGAGGCAAAGGAGCTTATAGACAAAATGCCAATGGAGCCTGATTCAATGGTCTGGAGTGCTTTGCTTGGAGGTTGTAGGAAACATGGTGAAACCAAGTTTGCCAAGTTAGCTGCAGTGAAACTAAAGGAGTTGGATCCCAATAATTCATTAGGATACATATTGATGTCAAACATATTTAGTACAAATGGTCATTTTAATGAAGCAAGATTAATAAGAAGGGAGATGGAAAGGAAGACAGTGAGAAAGGAACCAGGTTTGAGTTGGATTCAGGTTGGAAATCAGGTACATGAGTTTGCCTCTGGAGGCCAACAACATCCAGAAAAAGAGGCCTTATGTGCCAGGCTTGAAGAGCTAGTTAGGCAATTGAAGGACTTGGGTTACGTGCCTCAAATAAGTTTGGCCTTGCATGACATAGAAGATGAGCATAAAGAGGAGCAACTGTATTACCACAGTGAGAAGATGGCTTTGGTTTTCTCTTTGATGAATGCAGGTAGTATATATTCAAACCGTTTTCACCATTTTAAAGCGAAGGTGTGCTCTTGCAATGATTATTGGTGA 1740 0.4374 MLERNIVSWTALVSRYAQHGWPDECFRVFTDMLICHRPTEFAFASVISTSGGDGDCGRQVHALAVKTSFDSCVYVGNVLIMMYCRSCGGTDEAWNVYEAMGFRNLVSWNFMITGFQVCGCGNRALEIFSQMHFGGIRFDRATLVNIFSCLCGMGDGLECCFQLQCLTTKTGFISEIEVPTGLVKAYSSLGGEVNDCYRIFLELDGRQDVVSWTGIIAVFAERDPEEAFLLFRQFLRECLAPDRHMFSIVLKACAGLATEGHALTVQSHVLKVGFEDDIVLTNALIHTCARCGSVALSKQAFDKIGSRDTVSWNSMLKAYAMHGQGKEALQLFSQMDAQPDGATFVALISACSHAGMVEEGAKIFEAMSNNHGIVPQLDHYACMVDILGRAGRIYEAKELIDKMPMEPDSMVWSALLGGCRKHGETKFAKLAAVKLKELDPNNSLGYILMSNIFSTNGHFNEARLIRREMERKTVRKEPGLSWIQVGNQVHEFASGGQQHPEKEALCARLEELVRQLKDLGYVPQISLALHDIEDEHKEEQLYYHSEKMALVFSLMNAGSIYSNRFHHFKAKVCSCNDYW* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2024 579 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 5 39 IPR002885 -
Vvi18g2024 579 Pfam DYW family of nucleic acid deaminases 520 557 IPR032867 GO:0008270
Vvi18g2024 579 Gene3D Tetratricopeptide repeat domain 53 158 IPR011990 GO:0005515
Vvi18g2024 579 Gene3D Tetratricopeptide repeat domain 1 52 IPR011990 GO:0005515
Vvi18g2024 579 FunFam Putative pentatricopeptide repeat-containing protein At1g56570 58 164 - -
Vvi18g2024 579 Pfam E motif 422 484 IPR046848 -
Vvi18g2024 579 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 104 138 IPR002885 -
Vvi18g2024 579 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 549 IPR046960 GO:0003723|GO:0009451
Vvi18g2024 579 NCBIfam pentatricopeptide repeat 7 33 IPR002885 -
Vvi18g2024 579 NCBIfam pentatricopeptide repeat 310 336 IPR002885 -
Vvi18g2024 579 NCBIfam pentatricopeptide repeat 343 375 IPR002885 -
Vvi18g2024 579 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 338 IPR002885 -
Vvi18g2024 579 FunFam Os01g0815900 protein 182 307 - -
Vvi18g2024 579 Gene3D Tetratricopeptide repeat domain 308 518 IPR011990 GO:0005515
Vvi18g2024 579 Gene3D Tetratricopeptide repeat domain 161 307 IPR011990 GO:0005515
Vvi18g2024 579 FunFam Uncharacterized protein 308 518 - -
Vvi18g2024 579 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 340 375 IPR002885 -
Vvi18g2024 579 Pfam PPR repeat 106 132 IPR002885 -
Vvi18g2024 579 Pfam PPR repeat 380 404 IPR002885 -
Vvi18g2024 579 Pfam PPR repeat 7 33 IPR002885 -
Vvi18g2024 579 Pfam PPR repeat 310 335 IPR002885 -
Vvi18g2024 579 Pfam PPR repeat 343 368 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2024 Vvi-Chr18 28032837 28034687 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2024 1 579 Glycoside Hydrolase AT3G49170 32.532 3.75e-104 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2024 - - vvi:100263666 1046.96