Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2022 ATGGATCAAATAGTCTTGCCAGTTTTCGACCATGTGGATCCTTCTGATGTGCGGAAACAAAAAGGCAGTTTTGGAGAAGCATTTGCGAATCATAAAATAAATGCAGACGAGGAGAAGGTGCAAAGGTGGAAGGCTGCGATGGCTGAAGCAGGCTCTCTAAGTGAAATCCCCAAGTGGATCAACGCGTGGAGGTCTAGTGAAAGCGACAGCTCTAATACAGAAGGCTCAGAATCAGAGAACTCTGATTACTATTCTGCTGACGAGGGGGACCCCACTGTTGACTGTTGA 288 0.4688 MDQIVLPVFDHVDPSDVRKQKGSFGEAFANHKINADEEKVQRWKAAMAEAGSLSEIPKWINAWRSSESDSSNTEGSESENSDYYSADEGDPTVDC* 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2022 95 MobiDBLite consensus disorder prediction 64 82 - -
Vvi18g2022 95 MobiDBLite consensus disorder prediction 64 95 - -
Vvi18g2022 95 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 54 IPR035897 -
Vvi18g2022 95 Gene3D - 1 82 IPR035897 -
Vvi18g2022 95 Pfam TIR domain 2 61 IPR000157 GO:0007165
Vvi18g2022 95 PANTHER TMV RESISTANCE PROTEIN N-LIKE 3 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2022 Vvi-Chr18 28008743 28015625 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2022 5 47 Miscellaneous Gene Families AT1G57830 41.860 3.86e-06 41.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2022 - - vri:117906823 93.2041