Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2021 ATGGCGTCTGATTATTCTTCTTCCACCCCTAGATGCACGTATGACGTGTTCTTGAGTTTTAGAGGGGAAGACACCCGCAACAATTTCACCGATCACCTGTATACTGCTTTGGTTCAAAGGGGCATCAATACTTTTAGAGATGATAAACTTAGAAGAGGAGAAGAGATTGCACCAGAGCTTCTAAAAGCTATTGAAGAATCAAGATCTTCCATTGTTGTTTTCTCAAAAACTTATGCTCATTCAAGGTGGTGTTTAGACGAGCTTGCAAAGATCATGGAGTGTAGACGTGAATATAGGCAAATAGTATTGCCAATTTTCTACCATGTGGATCCAGCGGATGTGCGTAAACAAACAGGGAGTTTTGGAGAAGCATTCACCAGCTATGAAGAAAATTGGAAGAACAAGGCACAAAGGTGGAGGGAGGCTTTGACCGAAGCAGGCTATATTGCTGGATGGCCTATAAACAAGGGGTAA 474 0.4219 MASDYSSSTPRCTYDVFLSFRGEDTRNNFTDHLYTALVQRGINTFRDDKLRRGEEIAPELLKAIEESRSSIVVFSKTYAHSRWCLDELAKIMECRREYRQIVLPIFYHVDPADVRKQTGSFGEAFTSYEENWKNKAQRWREALTEAGYIAGWPINKG* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2021 157 Pfam TIR domain 14 145 IPR000157 GO:0007165
Vvi18g2021 157 SMART till_3 13 149 IPR000157 GO:0007165
Vvi18g2021 157 Gene3D - 8 157 IPR035897 -
Vvi18g2021 157 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 152 IPR035897 -
Vvi18g2021 157 ProSiteProfiles TIR domain profile. 12 157 IPR000157 GO:0007165
Vvi18g2021 157 FunFam Disease resistance protein (TIR-NBS-LRR class) 10 157 - -
Vvi18g2021 157 PANTHER TMV RESISTANCE PROTEIN N-LIKE 6 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2021 Vvi-Chr18 27994504 27994977 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2021 1 143 Miscellaneous Gene Families AT5G44900 38.356 2.93e-30 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2021 - - vvi:100241404 327.02