Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2020 ATGTTAATTTGGCACCAGCCAACGGAGTTTGCATTTGCCAGCGTGATTAGCGCTTGTGGTGGGGACGACAATTGTGGACGGCAAGTACACGCGCTTGCATTGAAGACTTCTTTTGATTCTTGTGTTTATGTCGGGAATGCTCTTATTATGATGTATTGCAAGAGTTGTGGTGGCGCGGATGAGGCTTGGAATGTGTATGAGGCCATGGGGTTTCGCAATTTGGTTTCTTGGAATTCTATGATTGCAGGGTTTCAGGTCTGTGGATGTGGAAATCGCGCACTTGAGCTCTTCTCACAGATGCACGTTGGTGGAATTCGGTTTGATCGTGCCACACTGGTCAGCATTTTTTCTTGCTTGTGTGGAATGGGTGATGGTCTTGAATGTTGTTTTCAATTGCAGTGTCTTACTATAAAAACTGGGTTTATCTTAAAAATTGAAGTGGCCACTGCCTTGGTCAAGGCTTATTCTAGTCTAGGAGGAGAGGTCAGTGATTGTTATAGGATCTTCTTGGAATTGGATGGCCGTCAAGATGTTGTTTCTTGGACTGGGATCATAGCAGCGTTTGCAGAACGGGACCCAAAAAAAGCACTCGTCATCTTTCGGCAGTTTCTTCGAGAGTGTTTGGCTCCAGATCGTCATATGTTTTCCATTGTCTTGAAAGCTTGTGCTGGTCTTGCAACTGAGCGGCATGCATTGACTGTCCAGTCACATGTTCTAAAAGTTGGATTTGAGGATGACATTGTGCTTGCAAATGCCTTGATTCATGCCTGTGCTAGGTGTGGCTCTGTTGCATTGTCAAAGCAAGTTTTTGACAAAATGGGATCCCGTGATACAGTTTCTTGGAATTCAATGTTGAAGGCATATGCTATGCATGGGCAAGGTAAGGAGGCATTGCTGCTCTTTTCACAAATGGATGCTCAACCTGATGGCGCCACCTTTGTTGCCCTCCTCTCAGCTTGTAGTCATGCTGGAATGGCGGAAGAAGGAGCTAAAATATTTGAGACAATGTCTAACAATCATGGTATTGTTCCTCAACTTGATCATTACGCCTGCATGGTTGATATTCTTGGTCGAGCTGGTCAAATTTCTGAGGCAAAGGAGCTTATAGACAAAATGCCAATGGAGCCTGATTCAGTGGTCTGGAGTGCCTTGCTTGGAAGTTGTAGGAAACATGGTGAAACCAAGTTAGCCAAGTTAGCTGCAGTGAAACTAAAAGAGTTGGATCCCAACAATTCATTAGGATACGTATTGATGTCAAACATATTTTGTACAGATGGTCGTTTTAATGAAGCAAGATTAATAAGAAGGGAGATGGAAGGGAAGATAGTGAGAAAGGAACCAGGTTTGAGTTGGATTGAGGTTGGAAATCAGGTACATGAGTTTGCCTCTGGAGGCCAACAACATCCAGAAAAAGAGGCCATATGTGCCAGGCTTGAAGAGCTAGTTAGGCGATTGAAGGATTTGGGTTACGTGCCTCAAATAAGTTTGGCCTTGCATGACATAGAAGATGAACATAAAGAGGAGCAACTGTATTACCACAGTGAGAAGCTGGCTTTGGCTTTCGCTTTGATGAATATTATGAAGAATATCCGAATTTGTGTAGATTGCCATAACTTTATGAAGTTGGCATCCGAACTTGTTGACATGGAGATTGTTGTGAGAGATTCAAACCGTTTTCACCATTTTAAAGCGAAGGTGTGCTCTTGCAATGATTATTGGTGA 1722 0.4338 MLIWHQPTEFAFASVISACGGDDNCGRQVHALALKTSFDSCVYVGNALIMMYCKSCGGADEAWNVYEAMGFRNLVSWNSMIAGFQVCGCGNRALELFSQMHVGGIRFDRATLVSIFSCLCGMGDGLECCFQLQCLTIKTGFILKIEVATALVKAYSSLGGEVSDCYRIFLELDGRQDVVSWTGIIAAFAERDPKKALVIFRQFLRECLAPDRHMFSIVLKACAGLATERHALTVQSHVLKVGFEDDIVLANALIHACARCGSVALSKQVFDKMGSRDTVSWNSMLKAYAMHGQGKEALLLFSQMDAQPDGATFVALLSACSHAGMAEEGAKIFETMSNNHGIVPQLDHYACMVDILGRAGQISEAKELIDKMPMEPDSVVWSALLGSCRKHGETKLAKLAAVKLKELDPNNSLGYVLMSNIFCTDGRFNEARLIRREMEGKIVRKEPGLSWIEVGNQVHEFASGGQQHPEKEAICARLEELVRRLKDLGYVPQISLALHDIEDEHKEEQLYYHSEKLALAFALMNIMKNIRICVDCHNFMKLASELVDMEIVVRDSNRFHHFKAKVCSCNDYW* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2020 573 Gene3D Tetratricopeptide repeat domain 229 303 IPR011990 GO:0005515
Vvi18g2020 573 NCBIfam pentatricopeptide repeat 75 108 IPR002885 -
Vvi18g2020 573 NCBIfam pentatricopeptide repeat 279 305 IPR002885 -
Vvi18g2020 573 NCBIfam pentatricopeptide repeat 312 344 IPR002885 -
Vvi18g2020 573 NCBIfam pentatricopeptide repeat 349 372 IPR002885 -
Vvi18g2020 573 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 73 107 IPR002885 -
Vvi18g2020 573 Gene3D Tetratricopeptide repeat domain 4 133 IPR011990 GO:0005515
Vvi18g2020 573 Gene3D Tetratricopeptide repeat domain 304 483 IPR011990 GO:0005515
Vvi18g2020 573 FunFam Putative pentatricopeptide repeat-containing protein At1g56570 27 130 - -
Vvi18g2020 573 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 307 IPR002885 -
Vvi18g2020 573 FunFam Uncharacterized protein 277 487 - -
Vvi18g2020 573 Pfam PPR repeat 75 104 IPR002885 -
Vvi18g2020 573 Pfam PPR repeat 279 304 IPR002885 -
Vvi18g2020 573 Pfam PPR repeat 251 276 IPR002885 -
Vvi18g2020 573 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 6 518 IPR046960 GO:0003723|GO:0009451
Vvi18g2020 573 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 344 IPR002885 -
Vvi18g2020 573 Gene3D Tetratricopeptide repeat domain 134 228 IPR011990 GO:0005515
Vvi18g2020 573 Pfam DYW family of nucleic acid deaminases 489 573 IPR032867 GO:0008270
Vvi18g2020 573 Pfam E motif 391 453 IPR046848 -
Vvi18g2020 573 FunFam Pentatricopeptide repeat-containing protein At1g71420 131 228 - -
Vvi18g2020 573 Pfam Pentatricopeptide repeat domain 305 356 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2020 Vvi-Chr18 27983868 27985625 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2020 6 573 Glycoside Hydrolase AT3G49170 35.654 3.66e-115 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2020 - - vvi:100263666 1148.27