Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2017 ATGGCAATGAGAAAGGGAGCTTCTTCTCCATGCCTCTTGTTTTTGTTCTTCTTCTTCACTTTGGTGCTCTTGGGGTGCCCTTCCCTAGGGCACCCTAACTACAAAGATGCCCTAGCAAAGTCCATATTGTTCTTTCAGGGGCAAAGGTCTGGGAGGCTCCCCACCGGCCAACAGATGAGTTGGAGGTCCAACTCTGGCCTCTCTGATGGCTCTCTTGCCCGTGTTGATTTAACCGGTGGCTACTACGACGCGGGTGACAATGTGAAGTTCAACTTTCCCATGGCCTTCGCCACCACCATGCTGTCATGGGGCACCCTAGAATACGGCAAGAGAATGGGGCCCCAGCTACAAAACTCGCGGGCCGCCATCCGCTGGGCCACGGACTACCTCATCAAGTGTGCAACGACTACCCCCAACACTCTCTATGTCGGAGTTGGGGATCCCACTGCCGACCACAAGTGCTGGGAGCGGCCGGAGGACATGGACACGGTCCGAACAGTGTACTCGGTGTCGCCTAGGAACCCAGGCTCGGATGTGGCGGGAGAGACTGCAGCTGCATTGGCAGCTGCGTCCATGGTTTTCCGGAAAGTTGATCCTAAGTATTCAAGGTTGCTCTTGGCAACTGCGAAGAAGGTGATGCAGTTTGCAATGCAGTATAGAGGGGCTTATAGTGACTCTCTTGGGTCAGCTGTCTGCCCATTCTACTGTTCGTATTCTGGGTATAAGGATGAGCTACTATGGGGAGCGGCATGGCTTTGGAGGGCAACAAACGATGCATCATACCTCAATTTCTTACAGTCCCTGGGAGCCAACGATGCCAGTGACATCTTCAGCTGGGACAACAAACTGGCCGGCGCTCGAGTCCTGCTATCACGGAGAGCTTTAATTGGTAATGATAAGCGTGTTGAGTCATTCAAGCAACAAGCTGAGGACTTCATGTGTAGAATCCTCCCTAATTCTCCTTCTTCAAGTACCAGTTACACACAAGGAGGGCTGATGTTCAAGCTGGCTGAGAGTAATTTACAGTACGTGACATCAATAACATTCTTGCTCAGCACATATGCCAAGTATATGACAGCCTCAAAGCACACCTTTAATTGTGGGAGCGTCAGGGTCAGCTCTACTACTTTGAGGAACCTTGCAAAGCAACAGGCATGTTCTTTTTCTCTATCATGA 1176 0.5136 MAMRKGASSPCLLFLFFFFTLVLLGCPSLGHPNYKDALAKSILFFQGQRSGRLPTGQQMSWRSNSGLSDGSLARVDLTGGYYDAGDNVKFNFPMAFATTMLSWGTLEYGKRMGPQLQNSRAAIRWATDYLIKCATTTPNTLYVGVGDPTADHKCWERPEDMDTVRTVYSVSPRNPGSDVAGETAAALAAASMVFRKVDPKYSRLLLATAKKVMQFAMQYRGAYSDSLGSAVCPFYCSYSGYKDELLWGAAWLWRATNDASYLNFLQSLGANDASDIFSWDNKLAGARVLLSRRALIGNDKRVESFKQQAEDFMCRILPNSPSSSTSYTQGGLMFKLAESNLQYVTSITFLLSTYAKYMTASKHTFNCGSVRVSSTTLRNLAKQQACSFSLS* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2017 391 PANTHER ENDO-1,4-BETA-GLUCANASE 14 385 - -
Vvi18g2017 391 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Vvi18g2017 391 SUPERFAMILY Six-hairpin glycosidases 30 384 IPR008928 GO:0005975
Vvi18g2017 391 Pfam Glycosyl hydrolase family 9 34 384 IPR001701 GO:0004553|GO:0005975
Vvi18g2017 391 Gene3D - 29 386 IPR012341 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2017 Vvi-Chr18 27952657 27955723 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2017 15 385 Glycoside Hydrolase AT1G71380 74.531 0.0 559
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2017 K01179 - vvi:100248251 761.911