Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2016 ATGTCTCGGTTCCATAAGGTTGGCTATGTCGTGGGAGTTTTGATCACTCTGGCTCTTGTTTGTCAAGCTAGGGTTCATTCTCATGGAGGGTTTGTTAGAACAGAGGGAACCCGGTTTGTACTTGGTGGGTCGTCTTCTCTTTTCAATGGTTTCAATTCCTACTGGATGATGCATGTTGCAACTGAGCCCAGTGAGAGGTATAAGGTCTCGAACACTTTCCGGGAGGCTGCTGATGCTGGCTTATCGGTGTGTCGGACTTGGGCTTTTAGCGATGGAGGCGATAGAGCGCTACAGATATCGCCCGGTACCTACGATGAACGTGTCTTTCAGGCACTGGATTTTGTGATCTCGGAGGCAAGACGATATGGGATTCGCTTGATTTTAAGTTTTGTGAATAACTACAAAGATTATGGAGGACGTCCGCAGTACGTTGAGTGGGCTCGAAATGCAGGAGTTAATGTTAATGGAGAGGATGATTTCTACACAACCCCAACGGTAAAAGAATACTATAAAAACCATGTTAAGAGAGTTATTACGAGGTTCAACACCATCACTAGAATTGTGTACAAAGATGATCCTACGATCATGGCATGGGAACTGATGAACGAGCCTCGCTGCCAAGCTGATTCCTCAGAAAAAATGGTTAATGGTTGGGTTCAAGAAATGGCAAGTTTTGTGAAATCTTTGGACAAAAACCACCTGCTTGAAATAGGCATGGAAGGATTTTACGGCGACTCTATGCCCGAAAAGAAGGTCAACAATCCTGGTTACCAAGTTGGCACTGATTTCATCAGCAACAATCTCATCAAAGAGATAGATTTTACCACCATACATGCATATCCTGATATTTGGCTGTCTGGACAAAATGAATCTGCGCAGATGGCCTTTATGCAAAGGTGGATGCAGAGTCACTCTATAGATTCAAAGGGAATACTAAAGAAGCCACTGGTCATGGCTGAATTTGGGAAATCAAGCAAAGGTCAAGGATACAGCTTGGGTGCAAGAGATCAGTACTTGAGCACAGTCTACCAAAGCATGAACAACTTTGAGAGCACCGGAGGAGGGATCAGCGGCAGCCTTGTTTGGCAACTCATGGCTGAAGGGATGGACTCATATGGGGATGGATATGGTATAATCTTGTCACAAGATGCCTCAACAAGGGGTGTAATTTCCGCACAGTCACATAAAATGACGACTTTTCGCCATATGTTGCTCGGAAGAAAACATGGAAAGTCGGTTCCTTGA 1245 0.4474 MSRFHKVGYVVGVLITLALVCQARVHSHGGFVRTEGTRFVLGGSSSLFNGFNSYWMMHVATEPSERYKVSNTFREAADAGLSVCRTWAFSDGGDRALQISPGTYDERVFQALDFVISEARRYGIRLILSFVNNYKDYGGRPQYVEWARNAGVNVNGEDDFYTTPTVKEYYKNHVKRVITRFNTITRIVYKDDPTIMAWELMNEPRCQADSSEKMVNGWVQEMASFVKSLDKNHLLEIGMEGFYGDSMPEKKVNNPGYQVGTDFISNNLIKEIDFTTIHAYPDIWLSGQNESAQMAFMQRWMQSHSIDSKGILKKPLVMAEFGKSSKGQGYSLGARDQYLSTVYQSMNNFESTGGGISGSLVWQLMAEGMDSYGDGYGIILSQDASTRGVISAQSHKMTTFRHMLLGRKHGKSVP* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2016 414 Gene3D Glycosidases 27 401 - -
Vvi18g2016 414 Pfam Cellulase (glycosyl hydrolase family 5) 52 342 IPR001547 GO:0004553|GO:0071704
Vvi18g2016 414 SUPERFAMILY (Trans)glycosidases 30 383 IPR017853 -
Vvi18g2016 414 FunFam Mannan endo-1,4-beta-mannosidase 6 28 401 - -
Vvi18g2016 414 PANTHER - 13 404 IPR045053 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2016 Vvi-Chr18 27936394 27938714 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2016 29 404 Glycoside Hydrolase AT5G66460 55.585 5.01e-159 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2016 K19355 - oeu:111384680 600.127