Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2015 ATGGTATGCTTTAGTAGAATTGGCTTCTTTTGGGGGCTTTTTCTTCTTGCAGCTCTAGCTTGTGAAGCTAGGGTTCTTCAAAATTCAGGCTTTGTTCAAACCCGAAACACCCAATTCATCCTGAATGGTTCCCCATTCTTCTTCAATGGATTTAACTCATACTGGTTGATGCACATCTCAGCAGAGCCAAGCCAAAGGAATAAGGTCTCTGATGTGTTTCGACAGGCTTCAGCTGCAGGTCTCAGTGTCTGTAGGACATGGGCATTCAGCGATGGAGGTTACCAAGCTCTGCAAATCTCTCCCGGAGTTTATGATGAACGCGTCTTTCAGGGACTTGATTTCGTGATTTCGGAGGCAAGAAAGAATGGAATCCGCTTAGTCTTGACTTTGAGCAACAACTACCAAGACTTTGGAGGAAGGCCTCAGTATGTGAATTGGGCTAAAAGTGCTGGTGTCTCAGTTAACAATGATGATGACTTTTACATTAATGCAGTCATAAAAGGTTACTATAAGAACCATGTCAAGAGAGTGATAACAAGGGTCAATACAATCACTGGAGTTGCTTACAAAGATGACCCAACAATCATGGCATGGGAACTTATGAATGAACCGCGTTGTCAAATCGATTACTCTGGAAAAACCCTAAATGGATGGGTTCAAGAAATGGCAAGCTATGTTAAATCTATTGACAACAAACACTTGTTGACAGTAGGTATGGAAGGATTTTATGGAGATTCACTGCCAGAAAGGAAGCCAGTCAACCCCGGCTACCAAGTTGGCACAGATTTTATTAGCAATCATCTTATTAGGGAGATTGATTTCACAACCATACATGCATATCCTGATATTTGGCTGAATGGAAAGGATGATAATGCACAAATGGCTTTCTTGCAAACATGGACGACTAGCCACTTGACAGACTCTAGGACAATAATAAAGAAGCCAATGATTTTTGCTGAATTTGGAAAATCAAGCAAGGATCCAGGATATAGTATAAATGCAAGGGATTCGTTCTTGAATGCTGTTTATACAAACATATACAGCTCTGCGAGAAGTGGAGGAATGGGTGGCGGCTTGGTTTGGCAGATCATGGCTGAAGGGATGGAATCATATTATGATGGATATGAGATTGTTCTATCCAAAAATCCATCAACAAGCAGTGTCATTACTCAACAATCTAGAAGAATGGCAGCCCTTGATCATATGTGA 1209 0.4136 MVCFSRIGFFWGLFLLAALACEARVLQNSGFVQTRNTQFILNGSPFFFNGFNSYWLMHISAEPSQRNKVSDVFRQASAAGLSVCRTWAFSDGGYQALQISPGVYDERVFQGLDFVISEARKNGIRLVLTLSNNYQDFGGRPQYVNWAKSAGVSVNNDDDFYINAVIKGYYKNHVKRVITRVNTITGVAYKDDPTIMAWELMNEPRCQIDYSGKTLNGWVQEMASYVKSIDNKHLLTVGMEGFYGDSLPERKPVNPGYQVGTDFISNHLIREIDFTTIHAYPDIWLNGKDDNAQMAFLQTWTTSHLTDSRTIIKKPMIFAEFGKSSKDPGYSINARDSFLNAVYTNIYSSARSGGMGGGLVWQIMAEGMESYYDGYEIVLSKNPSTSSVITQQSRRMAALDHM* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2015 402 FunFam Mannan endo-1,4-beta-mannosidase 6 28 400 - -
Vvi18g2015 402 Gene3D Glycosidases 26 400 - -
Vvi18g2015 402 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Vvi18g2015 402 PANTHER - 15 399 IPR045053 GO:0004553
Vvi18g2015 402 SUPERFAMILY (Trans)glycosidases 31 385 IPR017853 -
Vvi18g2015 402 Pfam Cellulase (glycosyl hydrolase family 5) 42 337 IPR001547 GO:0004553|GO:0071704
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2015 Vvi-Chr18 27926312 27927919 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2015 7 399 Glycoside Hydrolase AT5G66460 51.889 1.01e-156 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2015 K19355 - vvi:100260218 812.757