Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2014 ATGGCCTACTTCGGTAGAATCATCTCCTTTTCGGTGCTTTTCCTACTTGTTGCCCTAGCTTGTGAAGCTAGAGTACTTCTTCAATCTTCGGGATTTGTTCAAACTCGAAATACTCAATTCACCCTCAATGGTTCCCCTTTCTTCTTCAATGGGTTTAACTCATACTGGATGATGAACGTGGCTGCAGATCCAAGCCAAAGGAGTAAAGTGTCGGATGTTTTTAGCCAGGCTGCAGCTGTAAGGCTGAGTGTCTGTAGGACATGGGCATTCAACGATGGAGGCACCCAAGCTCTTCAAATATCTCCTGGAGTTTATGATGAGCGTGTCTTTCAGGGCCTTGACTTTGTGATCTCGGAAGCAAGAAAGAATGGAGTCCGCTTGATTTTGAGTTTGAGCAACAACTACAAAGACTTTGGAGGAAGGCCTCAGTACGTGAGTTGGGCTAGGAATGCTGGTGCTCCAGTAAATAGTGATGATGATTTTTACACTAATGAAGTCGTCAAAGGCTACTATAAGAACCACGTTAAGAGAGTGCTAACAAGGATCAATACGATCACCAGAGTTGCTTACAAAGATGACCCCACAATCATGGCATGGGAACTGATAAACGAGCCACGCTGCCAAGTTGATTACTCTGGAAAAACCCTAAATGGATGGATTCAAGAAATGGCAAGCTTTGTAAAATCCATTGACAGCAATCACTTGTTGACAGTAGGCATGGAAGGATTCTATGGAGATTCAATGCCAGAAAAGAAGGCAATAAACCCGGGTTACCAAGTTGGCACAGATTTTATCAGCAATCATCTTATTAGGGAGATTGATTTCTCAACCATACATGCATATCCTGATATTTGGCTGTCTGGGAAGGACGATAGCTCACAGATGGCTTTCATGCTAAGATGGACGACGAGCCATTTGACGGACTCAGAGACAATAATAAAGAAGCCAATGGTTTTTTCTGAATTTGGAAAATCGAGCAAGACCCGGGATATAGTCCAAGTGCAAGGGATTCATTCTTGA 1020 0.4333 MAYFGRIISFSVLFLLVALACEARVLLQSSGFVQTRNTQFTLNGSPFFFNGFNSYWMMNVAADPSQRSKVSDVFSQAAAVRLSVCRTWAFNDGGTQALQISPGVYDERVFQGLDFVISEARKNGVRLILSLSNNYKDFGGRPQYVSWARNAGAPVNSDDDFYTNEVVKGYYKNHVKRVLTRINTITRVAYKDDPTIMAWELINEPRCQVDYSGKTLNGWIQEMASFVKSIDSNHLLTVGMEGFYGDSMPEKKAINPGYQVGTDFISNHLIREIDFSTIHAYPDIWLSGKDDSSQMAFMLRWTTSHLTDSETIIKKPMVFSEFGKSSKTRDIVQVQGIHS* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2014 339 SUPERFAMILY (Trans)glycosidases 32 327 IPR017853 -
Vvi18g2014 339 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Vvi18g2014 339 FunFam Mannan endo-1,4-beta-mannosidase 6 29 337 - -
Vvi18g2014 339 Gene3D Glycosidases 28 336 - -
Vvi18g2014 339 Pfam Cellulase (glycosyl hydrolase family 5) 43 330 IPR001547 GO:0004553|GO:0071704
Vvi18g2014 339 PANTHER - 11 329 IPR045053 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2014 Vvi-Chr18 27922457 27923889 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2014 10 332 Glycoside Hydrolase AT5G66460 54.518 9.06e-138 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2014 K19355 - vvi:100267094 655.21