Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2012 ATGGCCTGCTTCAGTAGAATCACCTCCTTTTCAGTGCTTTTCCTACTCGTTGCCCTAGCTTGTGAAGCTAGAGTGCTTCTTCAATCTTCGGGATTTGTTCAGACTCGAAATACTCAATTCATCCTCAATGGTTCCCCTTTCTTCTTCAATGGGTTCAACTCATACTGGATGATGAATGTGGCCGCAGATCCAAGCCAAAGGAGTAAAGTGTCGGATGTTTTTAGCCAGGCTACAGCTGCACGGCTGAGTGTCTGTAGGACATGGGCATTCAACGATGGAGGCAGCCAAGCTCTTCAAATATCCCCTGGAGTTTATGATGAGCGTGTCTTTCAGGGACTTGACTTTGTGATCTCGGAGGCAAGAAAGAATGGAGTCCACTTGATTTTGAGTTTGAGCAACAACTACAAAGACTTTGGAGGAAGGCCTCAGTACGTGAGTTGGGCTAGAAATGCTGGTGCTCCAGTGAACAGTGATGATGATTTTTACACTAATGAAGTCGTCAAAGGCTACTATAAGAACCACGTTAAGAGAGTACTAACAAGGATCAATACAATCACCAGAGTTGCTTACAAAGATGACCCCACAATCATGGCATGGGAACTGATAAACGAGCCACGTTGCCAAGTTGATTACTCTGGAAAAACCATAAATGGATGGATTCAAGAAATGGCTAGCTATGTAAAATCCATTGACAACAACCACTTGTTGACAGTAGGCATGGAAGGATTCTATGGAGATTCAATGCCAGAAAAGAAGGCAATAAACCCTGGTTACCAAGTCGGCACAGATTTTATCAGCAATCATCTTGTTAAGGAGATTGATTTCACAACCATACATGCATATCCTGATATTTGGCTGTCCGGAAAGGATGATAGCTCACAGATGGCTTTCATGCAAAGATGGATGACGAGCCATTTGACAGACTCGGAGACAATAATAAAGAAGCCAATGGTTTTTTCTGAATTTGGAAAATCGAGCAAAGACCAGGGATATAGTATCAGTGCAAGGGATACATTCTTGAATGCCGTTTATACCAACATCTACAACTTTGCAAGAAGTGGAGGAATTGGTGGAGGCTTGGTTTGGCAACTCATGGTCGAGGGGATGCAGTCGTATGATGATGGATATGATATTGTTTTGTCTCAAAATCCTTCAACAAGCGGCATCATTACTCAACAATCTAATAAAATGATAGCCCTTGACCACGTCTAA 1212 0.4274 MACFSRITSFSVLFLLVALACEARVLLQSSGFVQTRNTQFILNGSPFFFNGFNSYWMMNVAADPSQRSKVSDVFSQATAARLSVCRTWAFNDGGSQALQISPGVYDERVFQGLDFVISEARKNGVHLILSLSNNYKDFGGRPQYVSWARNAGAPVNSDDDFYTNEVVKGYYKNHVKRVLTRINTITRVAYKDDPTIMAWELINEPRCQVDYSGKTINGWIQEMASYVKSIDNNHLLTVGMEGFYGDSMPEKKAINPGYQVGTDFISNHLVKEIDFTTIHAYPDIWLSGKDDSSQMAFMQRWMTSHLTDSETIIKKPMVFSEFGKSSKDQGYSISARDTFLNAVYTNIYNFARSGGIGGGLVWQLMVEGMQSYDDGYDIVLSQNPSTSGIITQQSNKMIALDHV* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2012 403 PANTHER - 11 400 IPR045053 GO:0004553
Vvi18g2012 403 Pfam Cellulase (glycosyl hydrolase family 5) 43 332 IPR001547 GO:0004553|GO:0071704
Vvi18g2012 403 Gene3D Glycosidases 28 401 - -
Vvi18g2012 403 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Vvi18g2012 403 FunFam Mannan endo-1,4-beta-mannosidase 6 29 401 - -
Vvi18g2012 403 SUPERFAMILY (Trans)glycosidases 32 386 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2012 Vvi-Chr18 27912068 27913691 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2012 10 403 Glycoside Hydrolase AT5G66460 53.149 2.20e-160 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2012 K19355 - vvi:100255129 813.142