Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2011 ATGAAGAAAGACGCGGCAGCATATGTCAAAAGCAAACTCAACACAAGTGCTTCATATCTAGACCAACAAGAATTCCTAAAACAAAACCCAGTTACTACAATGGCCTACTTCAGTAGAATCATCTCCTTTTCAGTGCTTTCCCTACTCATTGCCCTAGCTTGTGAAGCTAGAGTACTTCTTCAATCTTCGGGATTTGTTCAAACTCGAAATACTCAATTCATCCTCAATGGTTCCCCTTTCTTCTTCAACGGGTTTAACTCATACTGGATGATGAACGTGGCTGCAGATCCAAGCCAAAGGAGTAAAGTGTCGGATGTTTTTAGCCAGGCTGCAGCTGCACGGCTGAGTGTCTGTAGGACATGGGCATTCAACGATGGAGGCACCCAAGCTCTTCAAATATCTCCTGGAGTTTATGATGAGCGTGTCTTTCAGGGACTTGACTTTGTGATCTCGGAAGCAAAAAAGAATGGAGTCCGCTTGATTTTGAGTTTGAGCAACAACTACAAAGACTTTGGAGGAAGGCCTCAGTACGTGAATTGGGCTAGAAATGCTGGTGCTCCAGTGAACAGTGATGATGATTTTTACGCTAATGAAGTCGTGAAAGGCTACTATAAGAACCACGTTAAGAGAGTGCTAACAAGGATCAATACAATCACCAGACCACGCTGCCAAGTTGATTACTCTGGAAAAACCCTAAATGGATGGATTCAAGAAATGGCAAGCTTTGTAAAATCCATTGACAGCAATCACTTGTTGACAGTAGGCATGGAAGGATTCTATGGAGATTCAATGCCAGAAAAGAAGGCAATAAACCCTGGTTACCAAGTTGGCACAGATTTTATTAGCAATCATCTTATTAAGGAGATTGATTTCTCAACCATACATGCATATCCTGATATTTGGCTGTCTGGGAAGGATGACAGCTCACAGATGGCTTTCATGCTAAGATGGATGACGAGCCATTTGACAGACTCAGAGACAATAATAAATAAGCCAATGGTTTTTTCTGAATTTGGGAAATCAAGCAAAGACCCGGGATATAGTCTAAGTGCAAGGGATTCATTTTTGAATGCTGTTTATACCAACATCTACAACTTTGCAAGAAGTGGAGGAATCGGTGGAGGCTTGGTTTGGCAACTCATGGCCGAGGGGATGCAGTCATATGATGATGGGTATGAGATTGTTCTGTCTCAAAATCCTTCAACAAGCAGCGTCATTACTCAACAATCTAATAAAATGGCAGTCCTTGATCGGGTATAA 1260 0.4206 MKKDAAAYVKSKLNTSASYLDQQEFLKQNPVTTMAYFSRIISFSVLSLLIALACEARVLLQSSGFVQTRNTQFILNGSPFFFNGFNSYWMMNVAADPSQRSKVSDVFSQAAAARLSVCRTWAFNDGGTQALQISPGVYDERVFQGLDFVISEAKKNGVRLILSLSNNYKDFGGRPQYVNWARNAGAPVNSDDDFYANEVVKGYYKNHVKRVLTRINTITRPRCQVDYSGKTLNGWIQEMASFVKSIDSNHLLTVGMEGFYGDSMPEKKAINPGYQVGTDFISNHLIKEIDFSTIHAYPDIWLSGKDDSSQMAFMLRWMTSHLTDSETIINKPMVFSEFGKSSKDPGYSLSARDSFLNAVYTNIYNFARSGGIGGGLVWQLMAEGMQSYDDGYEIVLSQNPSTSSVITQQSNKMAVLDRV* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2011 419 Pfam Cellulase (glycosyl hydrolase family 5) 76 349 IPR001547 GO:0004553|GO:0071704
Vvi18g2011 419 PANTHER - 45 416 IPR045053 GO:0004553
Vvi18g2011 419 FunFam Mannan endo-1,4-beta-mannosidase 6 62 417 - -
Vvi18g2011 419 Gene3D Glycosidases 61 220 - -
Vvi18g2011 419 Gene3D Glycosidases 221 417 - -
Vvi18g2011 419 SUPERFAMILY (Trans)glycosidases 65 402 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2011 Vvi-Chr18 27892542 27903415 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2011 43 419 Glycoside Hydrolase AT5G66460 49.370 9.37e-144 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2011 K19355 - vvi:100267094 728.398