Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1999 ATGATGAAAGCATTGAAAGCCTCTCTCTTCCTCCTCGCCCTCCGGTGCCTCACCGTGGCATCCGCCGCCTGGCATGTGGACGATGAATCGGGTCTCCTCGCCTTCAAATCGGCCATCACCCATGACCCCTCAGGCATGCTTCAAGACTGGAAACCCGGCACGGACTGCTGCAAATGGTCCGGTATGGACTGCCTGGGTGAAAACCGGGTCATGACTCTCTCCCTCACTGGCCAACCCGGAGAACGGGATAGCTTCTTGTTCGGTACAATCTCGCCTTCTCTCGGCAAAGTGCAAAACCTGGTTGGAATTTACCTGCTGAACCTCCGAAACATCTCGGGCCCTTTCCGGATCTTTTTTTTCAGGATGTCGAAACCTCAATACGTTTACATCGAATACAACCGGCTTTCCGGCCTGATCCCCCGAAATATCGGAAACTTGGCTCGATTCAGTGCGATGAGCCTAGAGGGAAATCGGTTCACCGGGCCAATACCGAGTTCAATCTCCCAGCTTACTGGGTTGACTCAGCTCAACTTTGGCGGCAACATGCTCACTGGTCCCATACCGGCCGGAATCAGTCGGCTAAAGAACTTGTCCCTTCTCAGCGTCGATCGGAACCAGCTCTCCGCCGGTATACCGGACTTTTTCTCTTCATTCACCGACCTCAGAGTTCTCCGACTTTCTCACAATAAATTTTCTGGGAAAATTCCGAAAAGCATTTCAAGCTTAGCTCCAAATTTGGCCTATTTAGAGCTGGGCCACAATTCTCTAGCGGGTCAAGTCCCAGATTTTCTCGGAAACTTTACAGCACTGGACACCCTCGATCTTTCCTGGAACCAGTTCTCGGGCATTGTGCCAAAAACTTTCTCAAAGCTCACAAAAATATTCAACCTCGATCTATCACACAATTCTCTCGTCGATCCCTTCCCGGAAATGTTCTACAATCACTTCCATCTCGGTGCCATTCCAAAATGGGTCACATCGTCAGAGATCATCTATTCACCGAAGCTCGCAAAATGCGGACTCAAATTCAAATTAGACGATTGGAAGCCGTTGGAAACCTATTTCTACGACTACATTGATCTCTCGGAAAATAAAATCATCGGTAGTCCGATCCGGCTGTTAAACAAAACGGATTACCTAGTAGGGTTTTGGACCCCCGGCAACCAACTGCGATTCAATATGTCGAAATCGAGAATCGTGAAGACGCTGAACTACATAGATATGTCGCGGAACATGGTTTTCGGGAAGGTGCCTGAGGCGATATCGGGGCTGGAGAAGCTGAATGTGAGTCACAACCATTTGTGTGCTCGGATTCCGCCGTCGAAATTTCCGGCAAGCGCGTTCCAGGGCAACGACTGCCTAGTGAGAAAGCTCATACCATTTTCTACTTCCACTCTTCAAGCCACCGCCACCGCCATGTTAGCTTTGAAAAGCTCTCTCTTTTTCCTCCTCCTCTCTCTCCTCTCTCTCCTCACCCTCCAGTGCCTCACCGCCGCCTCCGCTGCCTGCCATGTGGACGACGAATTGGGTCTCCTCGCCTTCAAATCGGCCATCACCCATGACCCCTCCGGCATGCTTCAAAACTGGAAGTCCGGCACGGACTGCTGCAAATGGCCAGGTATCACCTGCCTGTCTGGAAACCGGGTCACGAGTCTCTCCCTCACGGGCCAACCTGGTAAACAGAATAGCTTTTTGTCCGGTACAATCTCGCCTTCTCTGGTGAAAGTGCAGAACTTGGATGGAATTTACCTGCAGAACCTCCGAAACATCACGGGTCCTTTTCCGGCTCTTCTTTTTGGGATGCCGAAACTCCTGTTCGTTTACATCGAAAACAACCAGCTTTCTGGCCCACTTCGCCGAGATATCGGAAACTTGACCCAACTCAATGCGCTGAGTTTTGAGGGTAACCGGTTCAGCGGGCCAATACCGAGTTCGATCTCCCAGCTGACTGGGTTGACTCAGCTCAAACTCGGTGGCAACCTCCTCACTGGCACAGTGCCAGCCGGCATCAGCCGGCTCAAGGACTTGACCTTTCTCAGCCTCGAACGGAACGGGCTCTCCGGCAGCATACCGGACTTCTTCTCCTCGTTCTCTAACCTCCGGATTCTCCGACTTTCTCACAATAAGTTTTCCGGGAAAATTCCGAACAGCATTTCAAGCTTATCTCCAAAATTGGCCTATTTGGAGGTGGGCCACAACTCCCTAGTGGGACAGATCCCAGATTTTCTCGGTAACTTTACAGCATTGGATACCCTTGATCTTTCCTGGAACCAATTCTCCGGCACTGTGCCAAAAACTTTCGCAAAGCTCACAAAAATATTCAACCTCGATCTGTCACACAATTTTCTCGTCGATCCCTTCCCAGAAATGTCCGTAAAAGGGATCGAATCACTCGATCTATCGTACAATCATTTCCATCTCGGTACAATTCCAAAATGGGTCACATCATCTGAGATCATCTACTCACTGAAGCTCGCAAAATGCGGACTCAAGTTCAAACTAGACGATTGGAAGCCGTCGGAAACCTATTTCTACGACTACATCGATCTCTCGGAAAACGAAATCACAGGTAGTCCGACCCAGTTGTTGAACAAAACCGATTACCTGGTAGGGTTTTGGGCCTCCGGCAACCAGCTGCGATTCGATTTCTCGAAACTGAGAATCGTGAAGACGCTGAAGTACTTGGATGTGTCGCGGAGCATGGTTTTCGGGAAGGTGCCTGAGGGGATAACGGGGTTGGAGAAGCTGAATGTGAGCCACAACCATTTGTGTGGTCGGCTTCCTCCGTCGAAGTTTCCAGCGAGTGCGTTCCAGGGCAATGACTGCCTGTGCGGGTCGCCGCTTTCGGCTTGCAAAAGGAGTAAATAA 2868 0.5059 MMKALKASLFLLALRCLTVASAAWHVDDESGLLAFKSAITHDPSGMLQDWKPGTDCCKWSGMDCLGENRVMTLSLTGQPGERDSFLFGTISPSLGKVQNLVGIYLLNLRNISGPFRIFFFRMSKPQYVYIEYNRLSGLIPRNIGNLARFSAMSLEGNRFTGPIPSSISQLTGLTQLNFGGNMLTGPIPAGISRLKNLSLLSVDRNQLSAGIPDFFSSFTDLRVLRLSHNKFSGKIPKSISSLAPNLAYLELGHNSLAGQVPDFLGNFTALDTLDLSWNQFSGIVPKTFSKLTKIFNLDLSHNSLVDPFPEMFYNHFHLGAIPKWVTSSEIIYSPKLAKCGLKFKLDDWKPLETYFYDYIDLSENKIIGSPIRLLNKTDYLVGFWTPGNQLRFNMSKSRIVKTLNYIDMSRNMVFGKVPEAISGLEKLNVSHNHLCARIPPSKFPASAFQGNDCLVRKLIPFSTSTLQATATAMLALKSSLFFLLLSLLSLLTLQCLTAASAACHVDDELGLLAFKSAITHDPSGMLQNWKSGTDCCKWPGITCLSGNRVTSLSLTGQPGKQNSFLSGTISPSLVKVQNLDGIYLQNLRNITGPFPALLFGMPKLLFVYIENNQLSGPLRRDIGNLTQLNALSFEGNRFSGPIPSSISQLTGLTQLKLGGNLLTGTVPAGISRLKDLTFLSLERNGLSGSIPDFFSSFSNLRILRLSHNKFSGKIPNSISSLSPKLAYLEVGHNSLVGQIPDFLGNFTALDTLDLSWNQFSGTVPKTFAKLTKIFNLDLSHNFLVDPFPEMSVKGIESLDLSYNHFHLGTIPKWVTSSEIIYSLKLAKCGLKFKLDDWKPSETYFYDYIDLSENEITGSPTQLLNKTDYLVGFWASGNQLRFDFSKLRIVKTLKYLDVSRSMVFGKVPEGITGLEKLNVSHNHLCGRLPPSKFPASAFQGNDCLCGSPLSACKRSK* 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1999 955 Gene3D Ribonuclease Inhibitor 505 670 IPR032675 -
Vvi18g1999 955 Gene3D Ribonuclease Inhibitor 191 461 IPR032675 -
Vvi18g1999 955 Pfam Leucine Rich Repeat 221 242 IPR001611 GO:0005515
Vvi18g1999 955 Pfam Leucine Rich Repeat 699 721 IPR001611 GO:0005515
Vvi18g1999 955 SUPERFAMILY L domain-like 534 907 - -
Vvi18g1999 955 Gene3D Ribonuclease Inhibitor 676 955 IPR032675 -
Vvi18g1999 955 SUPERFAMILY L domain-like 152 435 - -
Vvi18g1999 955 SMART LRR_typ_2 746 769 IPR003591 -
Vvi18g1999 955 SMART LRR_typ_2 910 939 IPR003591 -
Vvi18g1999 955 SMART LRR_typ_2 697 721 IPR003591 -
Vvi18g1999 955 SMART LRR_typ_2 218 242 IPR003591 -
Vvi18g1999 955 SMART LRR_typ_2 421 450 IPR003591 -
Vvi18g1999 955 SMART LRR_typ_2 649 673 IPR003591 -
Vvi18g1999 955 SMART LRR_typ_2 267 290 IPR003591 -
Vvi18g1999 955 SMART LRR_typ_2 170 194 IPR003591 -
Vvi18g1999 955 PANTHER POLYGALACTURONASE INHIBITOR 1 183 457 - -
Vvi18g1999 955 Pfam Leucine rich repeat 244 304 IPR001611 GO:0005515
Vvi18g1999 955 Pfam Leucine rich repeat 723 781 IPR001611 GO:0005515
Vvi18g1999 955 Gene3D Ribonuclease Inhibitor 27 190 IPR032675 -
Vvi18g1999 955 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Vvi18g1999 955 Pfam Leucine rich repeat N-terminal domain 506 543 IPR013210 -
Vvi18g1999 955 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 553 794 - -
Vvi18g1999 955 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 81 321 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1999 2 803 Receptor kinase-like Gene Family AT5G46330 27.435 8.70e-59 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1999 - - vvi:100261979 923.694