Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1997 ATGGATTGTATAAACCCAATCCTTGATGTTGCCATCACTGCCACACGTGCAGCTCATGGCACCGGTCTGCCAGAAACCCTTGAATATTTGAGAGACGCCATGGTGATCCTGAAGCACAAGGCTAATGATGTGAAGGCCGCGGTGGATTATGCTGAGGAAAACCGCAAGATGCGACGGACACATGAAGTGAGTAACTGGCTCCTCAGTGTAGAAGTCTTGGAAAAGGAAGTGATGGAGATACTGCAGAAGGGTGATCGGGAAATCCAGCAGAAATGCCTCGGAACCCGCTTTCCCAAGAATTACCGGTCAAGCTACAAGATCGAGAAGATAGCAAGTGAAACGATTGGTGTTGTCACTGAACTGAGGCACAGAGGCGATTTCAGCATTGTGGTTATTAGGCTGCCTAGAGCTGATGTGGATGAGCGGCCAATGGAGAAGACTGTGGGCTTGGATCGGATGTATGCAGAGGTTTGCAGATGCATCCAAGATGAAGAACCGGGAATTATTGGATTGTATGGTATGGGGGGTACCGGGAAAACTACCCTCATGACCAAAGTGAATAATGAGTTCTTATGCATTCATGACTTTGAAGTAGTCATCTGGGTTGTAGTATCCAGGCCAGCAACTGTGGGAAAAGTACAAGAAGTTATTCGCAACAAGTTAGACATCCCGGATGATAGATGGGGAAACAGAACTGAGGACGAAAAAGCAGTAGAAATTTTCAAAATCTTGAAGGCAAAAAGGTTTGTGATGCTGCTAGATGATGTATGGGAGCGTCTTGATCTCAAAAAAGTGGGGATTCCTTCACCCAATTCCCAAAACAGGTCCAAAGTAATATTAACAACCCGCTCTCGGGATGTTTGTCGGGATATGGAAGCTCAACAAATCCTTGAGATGGAGCGTTTGACACAAGATGATGCCATTAATTTGTTCATGGAGAAGGTTGGAAAGACTACTCTAAATTCACATCCGGATATACCCCAACTCGCTGAAATTGCTGCTAAAGAATGCCAAGGCTTACCACTTGCACTTGTTACTATTGGGCGAGCTATGGCTGGCAAGAACTCTCCACAAGAATGGGAGCCAGCAATACGAATGTTGAAGACTTATTCATCAAAGTTTTCAGCTTCCACGGCGGCTCCTTTTGCTTCTTCTCAATGGAGTTATGATGTGTTCCTTAGTTTTAGAGGAGAAGACACCCGCTTTACCTTTGCCGCTCATCTCTATGTAGCCTTGCACAGGAGAGGAGTCAACACTTTCTTTGATGACCACAAAATTAGGAGAGGCGAATCCATATCTCCAACACTCGTAAAAGCAATTGAAGGATCAAGGTCTTCTATCATACTTCTCTCTCAAAACTATGCCGGTTCAAGTTGGTGCTTAGAGGAACTAGTCAAGATACTGGAATGCAGGAAAACCATGGGACAACTGGTTCTGCCCATTTTCTACAATGTGGATCCATCAGATGTGCGAAGACACAAAGGGAGCTTTGGAGAGGCCTTGGTTAAGCATGAAAATACTTTGAAGCATGATATAGACAAGGTGAAGAATTGGAGGGAGGCCCTTAGTGAAGTTGCCAATTTAGCTGGCTGGAATTCACAGAATAAGTCTGAGCCTACGTTTCTCAAGGAAATCGTCATTGATGTTTTGAAAAGAGTGTTTGGATTATCGGCAGGTGATGCTAAGGCAATAGTAAAAGAAGATTCCCGTATACAAAACAAGGAAGTGGTACCAGGTCCACACTCAACCACTGTTCACATTGCAGGACAGTCTGGCATAAGTGCTAGAGGTAGGAGACCACCCATTGAAAATGTTGGGGAAGAATTAATTGACTCAGACTCAGACTCAGGATATGATGACGTGGAATCCATATTAACAAAAGTATGGACAAATTTATGA 1899 0.4439 MDCINPILDVAITATRAAHGTGLPETLEYLRDAMVILKHKANDVKAAVDYAEENRKMRRTHEVSNWLLSVEVLEKEVMEILQKGDREIQQKCLGTRFPKNYRSSYKIEKIASETIGVVTELRHRGDFSIVVIRLPRADVDERPMEKTVGLDRMYAEVCRCIQDEEPGIIGLYGMGGTGKTTLMTKVNNEFLCIHDFEVVIWVVVSRPATVGKVQEVIRNKLDIPDDRWGNRTEDEKAVEIFKILKAKRFVMLLDDVWERLDLKKVGIPSPNSQNRSKVILTTRSRDVCRDMEAQQILEMERLTQDDAINLFMEKVGKTTLNSHPDIPQLAEIAAKECQGLPLALVTIGRAMAGKNSPQEWEPAIRMLKTYSSKFSASTAAPFASSQWSYDVFLSFRGEDTRFTFAAHLYVALHRRGVNTFFDDHKIRRGESISPTLVKAIEGSRSSIILLSQNYAGSSWCLEELVKILECRKTMGQLVLPIFYNVDPSDVRRHKGSFGEALVKHENTLKHDIDKVKNWREALSEVANLAGWNSQNKSEPTFLKEIVIDVLKRVFGLSAGDAKAIVKEDSRIQNKEVVPGPHSTTVHIAGQSGISARGRRPPIENVGEELIDSDSDSGYDDVESILTKVWTNL* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1997 632 FunFam Probable disease resistance protein At1g61300 132 295 - -
Vvi18g1997 632 SMART till_3 388 528 IPR000157 GO:0007165
Vvi18g1997 632 ProSiteProfiles TIR domain profile. 387 553 IPR000157 GO:0007165
Vvi18g1997 632 PRINTS Disease resistance protein signature 168 183 - -
Vvi18g1997 632 PRINTS Disease resistance protein signature 337 351 - -
Vvi18g1997 632 PRINTS Disease resistance protein signature 243 257 - -
Vvi18g1997 632 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 143 371 IPR027417 -
Vvi18g1997 632 Gene3D - 385 555 IPR035897 -
Vvi18g1997 632 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 107 369 IPR044974 GO:0006952
Vvi18g1997 632 SUPERFAMILY Toll/Interleukin receptor TIR domain 382 531 IPR035897 -
Vvi18g1997 632 Pfam TIR domain 389 550 IPR000157 GO:0007165
Vvi18g1997 632 FunFam Disease resistance protein (TIR-NBS-LRR class) 385 554 - -
Vvi18g1997 632 SMART AAA_5 165 303 IPR003593 GO:0016887
Vvi18g1997 632 Gene3D - 301 384 IPR042197 -
Vvi18g1997 632 Pfam NB-ARC domain 163 389 IPR002182 GO:0043531
Vvi18g1997 632 Gene3D - 132 299 IPR027417 -
Vvi18g1997 632 FunFam Probable disease resistance protein At5g66910 301 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1997 Vvi-Chr18 27605341 27608757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1997 389 553 Miscellaneous Gene Families AT5G45220 29.762 6.03e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1997 - K13459 vvi:100265494 1226.85