Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1993 ATGGAGCAGTCTGAATCAACTGTAAACAACAGTTTGGTTTTTGCTGTTAATGGGAAAAGGTTTGAGGTCTCCACCATCCACCCTTCCACTACTTTGCTTGAATTCTTGCGTTCTCACACTCCTTTCAAAGGTGCCAAGCTCAGCTGCGGTGAAGGTGGTTGTGGTGCTTGCGTTGTCCTACTTTCCAAGTATAATCCTGTGCTTGACCAGGTGGATGATTTTACCGTGAGTTCATGTCTTACCCTGCTTTGTAGTATAAATGGATGTTCAATTACAACAACTGAAGGCCTTGGGAACACGAAAGATGGGTTCCACCCAATTCATGAAAGGTTCTCTGGATTCCATGCTTCTCAGTGTGGCTTTTGTACTCCTGGAATGTGCATGTCACTCTTCTCTGCTCTTGTCAATGCTGAGAAAATCCTCAGGCCAGAGCCCCCACTGGGATTCTCCAAATTGAAAGTTTCTGAAGCGGGGAAAGGGCTATTGCAGGAAATCTCTGCCGCTGTACTGGGTATTGCCCCATTGCTGATGCCTGTAAAAGTTTTGCAGCAGATGTTGATATGGAGGATTTGGGGTTTAATTCCTTTTGGAGAAAGGGTGATAGTAAAGAAGTGA 615 0.452 MEQSESTVNNSLVFAVNGKRFEVSTIHPSTTLLEFLRSHTPFKGAKLSCGEGGCGACVVLLSKYNPVLDQVDDFTVSSCLTLLCSINGCSITTTEGLGNTKDGFHPIHERFSGFHASQCGFCTPGMCMSLFSALVNAEKILRPEPPLGFSKLKVSEAGKGLLQEISAAVLGIAPLLMPVKVLQQMLIWRIWGLIPFGERVIVKK* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1993 204 SUPERFAMILY CO dehydrogenase ISP C-domain like 105 139 IPR036884 -
Vvi18g1993 204 CDD fer2 12 92 IPR001041 GO:0051536
Vvi18g1993 204 FunFam Xanthine dehydrogenase/oxidase 9 98 - -
Vvi18g1993 204 Gene3D - 97 167 - -
Vvi18g1993 204 PANTHER XANTHINE DEHYDROGENASE 10 160 IPR016208 GO:0005506|GO:0016491
Vvi18g1993 204 SUPERFAMILY 2Fe-2S ferredoxin-like 11 98 IPR036010 GO:0051536
Vvi18g1993 204 ProSitePatterns 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 49 57 IPR006058 GO:0051537
Vvi18g1993 204 Gene3D - 7 96 IPR012675 -
Vvi18g1993 204 ProSiteProfiles 2Fe-2S ferredoxin-type iron-sulfur binding domain profile. 10 97 IPR001041 GO:0051536
Vvi18g1993 204 Pfam [2Fe-2S] binding domain 93 138 IPR002888 GO:0016491|GO:0046872
Vvi18g1993 204 Pfam 2Fe-2S iron-sulfur cluster binding domain 15 82 IPR001041 GO:0051536
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1993 Vvi-Chr18 27506831 27508122 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1993 K09842 K11817 vvi:100255199 311.612