Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1980 ATGAAAGACCAGGTCAATGATCGAACTGACAAATATGGTGGATCCCTAGAGAACAGATGCCGGTTTCCTTTGGAAGTAGTTGAAGCTGTTGTTGATGAGATAGGGGCAGACAAAGTTGGAATAAGGCTTTCTCCATTTGCTACTTATGCAGAAGCAGGTGACTCGAATCCAAGAGCTCTAGGCCTTTACATGGCTGAATCCTTGAATAAATATGGGCTTCTCTACTGCCACATGGTTGAGCCAAGGATGAAAACACTCGGAGAAAAAAGTGAATGTGCCCATAGTCTTTTGCCCATGAGAAAAGCTTTCAATGGTACATTCCTTGTTGCTGGGGGGTATGACAGAGAAGATGGGAACAACGCTGTGGCAGAGAATCGCGCAGATCTTGTTGTGTATGGGCGTTGGTTCTTGGCCAACCCAGATCTTCCAAAGAGATTTGCGCTCAATGCTCCTCTCAACAAGTACAACAGAGAAACATTCTATACACCCGATCCTATTGTTGGTTATACCGATTATCCATTTCTTGAAGATACCGAGTAG 540 0.4444 MKDQVNDRTDKYGGSLENRCRFPLEVVEAVVDEIGADKVGIRLSPFATYAEAGDSNPRALGLYMAESLNKYGLLYCHMVEPRMKTLGEKSECAHSLLPMRKAFNGTFLVAGGYDREDGNNAVAENRADLVVYGRWFLANPDLPKRFALNAPLNKYNRETFYTPDPIVGYTDYPFLEDTE* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1980 179 Pfam NADH:flavin oxidoreductase / NADH oxidase family 3 152 IPR001155 GO:0010181|GO:0016491
Vvi18g1980 179 PANTHER NADH OXIDOREDUCTASE-RELATED 1 175 IPR045247 GO:0010181|GO:0016491
Vvi18g1980 179 Gene3D Aldolase class I 1 179 IPR013785 -
Vvi18g1980 179 SUPERFAMILY FMN-linked oxidoreductases 3 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1980 Vvi-Chr18 27385516 27386055 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1980 1 178 Acyl Lipid Metabolism Gene Families AT1G76690 75.843 3.67e-103 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1980 K05894 - vvi:100255087 372.474