Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1963 ATGGACGATAAGGTACAAGGACAAAATGGAGTCTCCGCTGAAACCCCCATCCCTCTTCTCAGGCCATACAAGTTGGGCAAGTTCCAGCTTTCTCACAGGATTGTTCTAGCACCATTAACCAGACAGAGATCTTGGAACAATGTTCCTCAACCACCTGCTATCTTACATTACTCTCAAAGAACCAGCAAAGGGGGTCTTCTCATAGCCGAAGCTACAGGAGTTTCCGACACTGCTGAAGGGTACTTATAA 249 0.4659 MDDKVQGQNGVSAETPIPLLRPYKLGKFQLSHRIVLAPLTRQRSWNNVPQPPAILHYSQRTSKGGLLIAEATGVSDTAEGYL* 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1963 82 Gene3D Aldolase class I 18 82 IPR013785 -
Vvi18g1963 82 PANTHER NADH OXIDOREDUCTASE-RELATED 15 81 IPR045247 GO:0010181|GO:0016491
Vvi18g1963 82 Pfam NADH:flavin oxidoreductase / NADH oxidase family 19 81 IPR001155 GO:0010181|GO:0016491
Vvi18g1963 82 FunFam - 17 82 - -
Vvi18g1963 82 SUPERFAMILY FMN-linked oxidoreductases 18 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1963 Vvi-Chr18 27216525 27217681 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1963 13 81 Acyl Lipid Metabolism Gene Families AT1G76690 73.913 3.59e-31 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1963 K05894 - vvi:109121652 168.318