Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1961 ATGGAAGGAAAAGTGCCAGGAAAGCAGCCCCTTCTCACACCATATAAGATGGGCAAGTTTCAGCTCTCTCATAGGGTGGTTCTGGCTCCACTAACTAGACAGAGATCTTGGAACAATGTTCCTCAGCCCCATGCAATCTTGTATTACTCCCAGAGAGCCACTAAAGGGGGGCTTCTCATAACTGAAGCAACTGGAGTTTCTGACACTGCTCAAGGCTATGCACATACCCCGGGTATATGGACAAAAGAGCAAGTTGAAGCCTGGAAGCCCATTGTAGATGCTGTTCATGCTAAAGGCAGTATCTTTATTTGTCAGCTTTGGCATGTGGGAAGAGTTTCAAACACAGAATTCCAGCCAAATGGGCAAGCTCCATTATCTTCTACAGACAAGGCATTGACGCCACAAGTCCGAAGCAATGGCTTTGATGTTGCTGAGTTCACAGCTCCTAGGCGGCTAACAACAGATGAAGTTCCTCGAGTTGTCAATGATTTTAGACTTGCTGCAAGAAATGCTATGGAAGCTGGTTTTGATGGAGTTGAGATCCATGGGGCTCATGGCTATCTACTTGACCAGTTCATGAAAGACCAGGTCAATGATCGAACAGACAAGTATGGTGGATCCCTAGAGAACCGTTGCAGGTTCCCATTGGAAGTAGTAGAAGCGGTTGTTAATGAGATAGGAGCTGATAAGGTTGGAATAAGGCTTTCTCCATTTGGCCATCATGCCGAGGCAGGAGACTCCAATCCAACAGCTCTGGGCCTTTACATGGTTGAATCCTTAAACAAATATGGTGTCCTCTATTGCCACATGGTTGAGCCAAGGATAAGAGCAGCCGGAGAAATGTGTGAGTGTCCCCACAGCCTTGTGCCCTTGAGGAAGGCTTTCAATGGCACATTCATAGCCGCTGGGGGTTATGTGAAAGAAGACGGAAACAATGCTGTGGCTGAGGAGCGTGCAGATCTTGTTGCATTTGGACGTTGGTTCTTAGCCAACCCAGATCTTCCAAAAAGATTTGCGCTCAATGCTCCTCTCAACAAGTATAACAGGGAGACATTCTACGCACCCGAACCCATAATCGGCTACACTGATTATCCATTTCTTGAGGATATTGTTGAGTAG 1119 0.4674 MEGKVPGKQPLLTPYKMGKFQLSHRVVLAPLTRQRSWNNVPQPHAILYYSQRATKGGLLITEATGVSDTAQGYAHTPGIWTKEQVEAWKPIVDAVHAKGSIFICQLWHVGRVSNTEFQPNGQAPLSSTDKALTPQVRSNGFDVAEFTAPRRLTTDEVPRVVNDFRLAARNAMEAGFDGVEIHGAHGYLLDQFMKDQVNDRTDKYGGSLENRCRFPLEVVEAVVNEIGADKVGIRLSPFGHHAEAGDSNPTALGLYMVESLNKYGVLYCHMVEPRIRAAGEMCECPHSLVPLRKAFNGTFIAAGGYVKEDGNNAVAEERADLVAFGRWFLANPDLPKRFALNAPLNKYNRETFYAPEPIIGYTDYPFLEDIVE* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1961 372 FunFam 12-oxophytodienoate reductase 3 4 371 - -
Vvi18g1961 372 PANTHER NADH OXIDOREDUCTASE-RELATED 8 367 IPR045247 GO:0010181|GO:0016491
Vvi18g1961 372 SUPERFAMILY FMN-linked oxidoreductases 9 367 - -
Vvi18g1961 372 CDD OYE_like_FMN 10 349 - -
Vvi18g1961 372 Gene3D Aldolase class I 3 371 IPR013785 -
Vvi18g1961 372 Pfam NADH:flavin oxidoreductase / NADH oxidase family 11 344 IPR001155 GO:0010181|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1961 Vvi-Chr18 27197974 27199841 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1961 10 368 Acyl Lipid Metabolism Gene Families AT1G76690 74.930 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1961 K05894 - vvi:100250034 768.074