Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1960 ATGGACGGGAAAGTACAAGGAATAAATGGCGTCTCTGCTGAAACCCCCATCCCTCTTATCACTCCATACAAATTGGGCAAGTTCCAGCTCTCTCACAGGGTTGTTCTAGCACCATTAACCAGGCAGAGATCTTGGAACAATGTTCCTCAACCACATGCTATCTTACATTACTCTCAAAGAACCAGCAAAGGGGGTCTTCTCATAGCTGAAGCAACGGGAGTTTCGGACACTGCTCAAGGGTATCCAAATACACCAGGCATATGGACAAAAGAACAAGTTGAAGCTTGGAAACCTATTGTAGATGCTGTTCATGCTAAAGGCGGTATCTTTTTTTGTCAGATTTGGCATGTGGGGAGGGTTTCAAACACGGGTTTCCAGCCAAACGGGCAAGCTCCAATCTCTTGTACAGACAAGCCATTGACACCCCAAATCGGAGCCAATGGCATTGATGTTGACCAGTTCTCACCTCCCCGGCGGCTAACAACAGATGAAATCCCTCAAGTTGTAAAGGATTTTAGACTTGCTGCAAGGAACGCTATTGAAGCTGGTTTTGATGGAGTTGAGATCCATGGGGCTCATGGCTACCTACTTGACCAGTTCATGAAAGACCAGGTCAATGATCGAACTGACAAATATGGTGGATCCCTAGAGAACAGATGCCGGTTTCCTTTGGAAGTAGTTGAAGCTGTTGTTGATGAGATAGGGGCAGACAAAGTTGGAATAAGGCTTTCTCCATTTGCTACTTATGCAGAAGCAGGTGACTCGAATCCAAGAGCTCTAGGCCTTTACATGGCTGAATCCTTGAATAAATATGGGCTTCTCTACTGCCACATGGTTGAGCCAAGGATGAAAACACTCGGAGAAAAAAGTGAATGTGCCCATAGTCTTTTGCCCATGAGAAAAGCTTTCAATGGTACATTCCTTGTTGCTGGGGGGTATGACAGAGAAGATGGGAACAACGCTGTGGCAGAGAATCGCGCAGATCTTGTTGTGTATGGGCGTTGGTTCTTGGCCAACCCAGATCTTCCAAAGAGATTTGCGCTCAATGCTCCTCTCAACAAGTACAACAGAGAAACATTCTATACACCCGATCCTGTTCTTGGTTACACTGATTATCCATTTCTTGAAGACGCGGAGTAG 1140 0.4588 MDGKVQGINGVSAETPIPLITPYKLGKFQLSHRVVLAPLTRQRSWNNVPQPHAILHYSQRTSKGGLLIAEATGVSDTAQGYPNTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIWHVGRVSNTGFQPNGQAPISCTDKPLTPQIGANGIDVDQFSPPRRLTTDEIPQVVKDFRLAARNAIEAGFDGVEIHGAHGYLLDQFMKDQVNDRTDKYGGSLENRCRFPLEVVEAVVDEIGADKVGIRLSPFATYAEAGDSNPRALGLYMAESLNKYGLLYCHMVEPRMKTLGEKSECAHSLLPMRKAFNGTFLVAGGYDREDGNNAVAENRADLVVYGRWFLANPDLPKRFALNAPLNKYNRETFYTPDPVLGYTDYPFLEDAE* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1960 379 Pfam NADH:flavin oxidoreductase / NADH oxidase family 19 352 IPR001155 GO:0010181|GO:0016491
Vvi18g1960 379 SUPERFAMILY FMN-linked oxidoreductases 18 375 - -
Vvi18g1960 379 PANTHER NADH OXIDOREDUCTASE-RELATED 15 375 IPR045247 GO:0010181|GO:0016491
Vvi18g1960 379 FunFam 12-oxophytodienoate reductase 3 12 379 - -
Vvi18g1960 379 CDD OYE_like_FMN 18 357 - -
Vvi18g1960 379 Gene3D Aldolase class I 8 379 IPR013785 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1960 Vvi-Chr18 27186796 27189171 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1960 13 376 Acyl Lipid Metabolism Gene Families AT1G76690 78.297 0.0 623
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1960 K05894 - vvi:100267062 784.637