Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1959 ATGGGGCATAATGAGGATGTCATGTTTCCATGTGAGATCAAGGAGGTGGGATTGCGATGTCTCATATCAAATGTGAGGGTGGTTCTGGCTCCACTAACTAGACAGAGATCTTGGAACAATGTTCCTCAGCCCCATGCAATCTTGTATTACTCCCAGAGAGCCACTAAAGGGGGGCTTCTCATAACTGAAGCAACTGGAGTTTCCGACACTGCTCAAGGCTATGCACATACCCAGCTTTGGCATGTGGGAAGAGTTTCAAACACAGAATTCCAGCCAAATGGGCAAGCTCCAATATCTTCTACAGACAAGGCATTGACGCCACAAATCCAAAGCAATGGCTTTGATGTTGCTGAGTTCTCAGCTCCAAGGCGGCTAACAACAGATGAAATTCCTCAAGTTGTCAATGATTTTAGACTTGCTGCAAGAAATGCTATGGAAGCTGGTTTTGATGGAGTTGAGATCCATGGGGCTCATGGCTATCTACTTGACCAGGTCAATGATCGAACAGACAAGTATGGTAGATCACTAGAGAACCGTTGCAGGTTCCCATTGGAAGTAGTAGAAGCGGTTGTTAATGAGATAGGAGCTGATAAGGTTGGAATAAGGCTTTCTCCATTTGGCCATCATGCCGAGGCAGGAGACTCCAACCCAACGGCTCTAGGCCTTTACATGGTTGAATCTTTAAACCAATCTGGTGTTCTCTATTGCCACATGGTTGAGCCAAGGATAAGAATAGCTGGAGAAATGTGTGAGTGTCCCCACAGCCTTGTGCCCTTGAGGAAGGCTTTCAATGGCACATTCATAGCCGCTGGGGGTTATGTGAAAGAAGACGGAAACAATGCTGTGGCTGAGGAGCGTGCAGATCTTGTTGCATTTGGACGTTGGTTCTTAGCCAACCCAGATCTTCCGAAAAGATTTGCGCTCAATGCTCCTCTCAACAAGTATAGCAGGGAGACATTCTACGCACCCGAACCTATAATCGGCTACACTGATTATCCATTTCTTGAGGATATTGTTGAGTAG 1023 0.4633 MGHNEDVMFPCEIKEVGLRCLISNVRVVLAPLTRQRSWNNVPQPHAILYYSQRATKGGLLITEATGVSDTAQGYAHTQLWHVGRVSNTEFQPNGQAPISSTDKALTPQIQSNGFDVAEFSAPRRLTTDEIPQVVNDFRLAARNAMEAGFDGVEIHGAHGYLLDQVNDRTDKYGRSLENRCRFPLEVVEAVVNEIGADKVGIRLSPFGHHAEAGDSNPTALGLYMVESLNQSGVLYCHMVEPRIRIAGEMCECPHSLVPLRKAFNGTFIAAGGYVKEDGNNAVAEERADLVAFGRWFLANPDLPKRFALNAPLNKYSRETFYAPEPIIGYTDYPFLEDIVE* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1959 340 SUPERFAMILY FMN-linked oxidoreductases 26 335 - -
Vvi18g1959 340 Gene3D Aldolase class I 13 339 IPR013785 -
Vvi18g1959 340 Pfam NADH:flavin oxidoreductase / NADH oxidase family 74 312 IPR001155 GO:0010181|GO:0016491
Vvi18g1959 340 CDD OYE_like_FMN 26 317 - -
Vvi18g1959 340 PANTHER NADH OXIDOREDUCTASE-RELATED 10 77 IPR045247 GO:0010181|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1959 Vvi-Chr18 27158329 27161921 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1959 26 336 Acyl Lipid Metabolism Gene Families AT1G76690 64.826 1.12e-166 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1959 K05894 - vvi:100250034 608.216