Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1957 ATGGTGGTTCTGGCTCCACTAACTAGACAGAGATCTTGGGACAATGTTCCTCAGCCCCATGCAATCTTGTATTACTCCCAGAGAGCCACTAAAGGGGGGCTTCTCATAACTGAAGCAACTGGAGTTTCCGACACTGCTCAAGGCTATGCACATACCCCGGGTATATGGACAAAAGAGCAAGTTGAAGCCTGGAAGCCCATTGTAGATGCTGTTCATGCTAAAGGCAGTATCTTTATTTGTCAGCTTTGGCATGTGGGAAGAGTTTCAAACACAGAATTCCAGCCAAATGGGCAAGCTCCATTATCTTCTACAGACAAGGCATTGACGCCACAAGTCCGAAGCAATGGCTTTGATGTTGCTGAGTTCACAGCTCCTAGGCGGCTAACAACAGATGAAGTTCCTCGAGTTGTCAATGATTTTAGACTTGCTGCAAGAAATGCTATGGAAGCTGGTTTTGATGGAGTTGAGATCCATGGAGCTCATGGCTATCTACTTGACCAGTTCATGAAAGACCAGGTCAATGATCGAACAGACAAGTATGGTGGATCACAAGAGAACCGTTGCAGGTTCCCATTGGAAGTAGTAGAAGCGGTTGTTAATGAGATAGGAGCTGATAAGGTTGGAATAAGGCTTTCTCCATTTGGCCATCATGCCCAGGCAGGAGACTCCAATCCAACAGCTCTGGGCCGTTACATGGTTGAATCCTTAAACAAATATGGTGTCCTCTATTGCCACATGGTTGAGCCAAGGATAAGAGCAGCCGGAGAAATGTATGAGGGTCCCCACAGCCTCGTGCCCTTGAGAAAGGCTTTCAATGGCACATTCATAGCCGCTGGGGGTTATGTGAAAGAAGACGGAAACAATGCTGTGGCTGAGGAGCGTGCAGATCTTGTTGCATTTGGACGTTGGTTCTTAGCCAACCCAGATCTTCCAAAAAGATTTGCGCTCAATGCTCCTCTCAACAAGTATGACAGGGAGACATTCTACGCACCCGAACCCATAATCGGCTACACTGATTATCCATTTCTTGAGGATTTTGAGTAG 1044 0.4684 MVVLAPLTRQRSWDNVPQPHAILYYSQRATKGGLLITEATGVSDTAQGYAHTPGIWTKEQVEAWKPIVDAVHAKGSIFICQLWHVGRVSNTEFQPNGQAPLSSTDKALTPQVRSNGFDVAEFTAPRRLTTDEVPRVVNDFRLAARNAMEAGFDGVEIHGAHGYLLDQFMKDQVNDRTDKYGGSQENRCRFPLEVVEAVVNEIGADKVGIRLSPFGHHAQAGDSNPTALGRYMVESLNKYGVLYCHMVEPRIRAAGEMYEGPHSLVPLRKAFNGTFIAAGGYVKEDGNNAVAEERADLVAFGRWFLANPDLPKRFALNAPLNKYDRETFYAPEPIIGYTDYPFLEDFE* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1957 347 Gene3D Aldolase class I 1 347 IPR013785 -
Vvi18g1957 347 Pfam NADH:flavin oxidoreductase / NADH oxidase family 2 320 IPR001155 GO:0010181|GO:0016491
Vvi18g1957 347 PANTHER NADH OXIDOREDUCTASE-RELATED 2 343 IPR045247 GO:0010181|GO:0016491
Vvi18g1957 347 FunFam 12-oxophytodienoate reductase 3 1 347 - -
Vvi18g1957 347 SUPERFAMILY FMN-linked oxidoreductases 2 343 - -
Vvi18g1957 347 CDD OYE_like_FMN 2 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1957 Vvi-Chr18 27122060 27179916 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1957 2 344 Acyl Lipid Metabolism Gene Families AT1G76690 72.886 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1957 K05894 - vvi:100261845 709.523